View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3203_high_12 (Length: 207)
Name: NF3203_high_12
Description: NF3203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3203_high_12 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 34787657 - 34787852
Alignment:
| Q |
12 |
gaaaggaattcgaggatttaattcggcgagtgaggtggaatgttagtgtttggattaagtatgcacagtgggaagagtcgcagaaggattttacacgtgc |
111 |
Q |
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| T |
34787657 |
gaaaggaattcgaggatttaattcggcgagtgaggtggaatgttagtgtttggattaagtatgcacagtgggaagagtcgcagaaggattttacacgtgc |
34787756 |
T |
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| Q |
112 |
acgttcggtttgggaacgagcattggaagttgattataagaatcatactttgtggttgaagtatgctcaagttgagatgaagaataagtttattaa |
207 |
Q |
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| T |
34787757 |
acgttcggtttgggaacgagcattggaagttgattataagaatcatactttgtggttgaagtatgctcaagttgagatgaagaataagtttattaa |
34787852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 2293540 - 2293345
Alignment:
| Q |
12 |
gaaaggaattcgaggatttaattcggcgagtgaggtggaatgttagtgtttggattaagtatgcacagtgggaagagtcgcagaaggattttacacgtgc |
111 |
Q |
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|||||||||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2293540 |
gaaaggaattcgaggatttaatccggagagttcggtggaatgtcagtgtttggattaagtatgcacagtgggaagagtcgcagaaagattttacacgtgc |
2293441 |
T |
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| Q |
112 |
acgttcggtttgggaacgagcattggaagttgattataagaatcatactttgtggttgaagtatgctcaagttgagatgaagaataagtttattaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2293440 |
acgttcggtttgggaacgagcattggaagttgattataagaatcatactttgtggttgaagtatgctgaagttgagatgaagaataagtttattaa |
2293345 |
T |
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