View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3203_high_2 (Length: 424)
Name: NF3203_high_2
Description: NF3203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3203_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 6 - 408
Target Start/End: Original strand, 342893 - 343295
Alignment:
| Q |
6 |
atctcagcagccggtacactttgattaatatcaacaccattatcatcaacatcatgatcaggagtttcaacagtgtcttcatcagaggtttgttccaatt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
342893 |
atctcagcagccggtacactttgattaatatcaacaccattatcatcaacatcatgatcaggagtttcaacagtgtcttcatcagaggtttgttccaatt |
342992 |
T |
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| Q |
106 |
gctgttgaagtaacttctcagtaagatacatctccgccatatcttcatcatcatcaagtaaatgttccaattcatctctcactttttgaaccctcccagt |
205 |
Q |
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| T |
342993 |
gctgttgaagtaacttctcagtaagatacatctccgccatatcttcatcatcatcaagtaaatgttccaattcatctctcactttttgaaccctcccagt |
343092 |
T |
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| Q |
206 |
aatcgcaaccaaacggctcttaatctgacgaacacgttccaaattgagagtactaatcttcgaagtcaatttatcaagagctggatgcgcttcttgttcc |
305 |
Q |
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| T |
343093 |
aatcgcaaccaaacggctcttaatctgacgaacacgttccaaattgagagtactaatcttcgaagtcaatttatcaagagctggatgcgcttcttgttcc |
343192 |
T |
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| Q |
306 |
aacgtcttcgcttcactctccaaaacactgcaagctgcttcaagacaagcttccagtgcaacgaattcaaatggaagaatcttaattccaccgtgagaat |
405 |
Q |
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| T |
343193 |
aacgtcttcgcttcactctccaaaacactacaagctgcttcaagacaagcttcaagtgcaacgaattcaaatggaagaatcttaattccaccgtgagaat |
343292 |
T |
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| Q |
406 |
ctt |
408 |
Q |
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| T |
343293 |
ctt |
343295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 48001170 - 48001112
Alignment:
| Q |
222 |
ctcttaatctgacgaacacgttccaaattgagagtactaatcttcgaagtcaatttatc |
280 |
Q |
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| T |
48001170 |
ctcttaatatgacgaacacgttccaaattaagagtactaatctttgaagtcaacttatc |
48001112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 45385224 - 45385265
Alignment:
| Q |
232 |
gacgaacacgttccaaattgagagtactaatcttcgaagtca |
273 |
Q |
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| T |
45385224 |
gacgaacacgttccaaatttagagtactgatcttcgatgtca |
45385265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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