View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3203_high_6 (Length: 330)
Name: NF3203_high_6
Description: NF3203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3203_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 316
Target Start/End: Original strand, 18078720 - 18079029
Alignment:
| Q |
7 |
gcagcacagacagttagggttcacctacatttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacact |
106 |
Q |
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|||||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| ||| |
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| T |
18078720 |
gcagcatagacaattacggttcacctacatttgaaatttcaatggcggaggacgagaacagcgtcatagtcacatatacagtaaaaatcaaagtcagact |
18078819 |
T |
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| Q |
107 |
cacagtcccggacctaaacgaactcattcctgatcatgatcatcgatggagacggtaccgttggagggtgatgacgtggcaccagctatcggtgttggcg |
206 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18078820 |
cacagtcccggacctagacgaacccattcctgatcatgatcatcgatggagacggtaccgttggagggtgatgacgtggcaccagctatcggtgttggcg |
18078919 |
T |
|
| Q |
207 |
ctaaaatggcttcgttgaacgacgctgaaggtgacgacgtggcagcagcagttgaagaatttgctcctggtcgagaaaaacaagctatggactttggcgc |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18078920 |
ctaaaatggcttcgttgaacgacgctgaaggtgacgacgtggcagcagcagttgaagaatttgctcctgatcgagaaaaacaagctatggactttggcgc |
18079019 |
T |
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| Q |
307 |
caaaatggtg |
316 |
Q |
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|||||||||| |
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| T |
18079020 |
caaaatggtg |
18079029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 18076816 - 18076913
Alignment:
| Q |
18 |
agttagggttcacctacatttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacactcacagtccc |
115 |
Q |
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| T |
18076816 |
agttagggttaacctgcatttcaaatttctatggcgggagaagagaaccaccacatagtcacatatatagtgaaaatcaaagtcacactcacggtccc |
18076913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 218 - 309
Target Start/End: Original strand, 18077026 - 18077117
Alignment:
| Q |
218 |
tcgttgaacgacgctgaaggtgacgacgtggcagcagcagttgaagaatttgctcctggtcgagaaaaacaagctatggactttggcgccaa |
309 |
Q |
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| T |
18077026 |
tcgttgaacgacggtgaaggtgatgatgtggcggcagcagctgttgaatctgttcctggtcgagaaaaacaaactatggatgttggcgccaa |
18077117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 51478309 - 51478443
Alignment:
| Q |
18 |
agttagggttcacctacatttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacactcacagtcccgg |
117 |
Q |
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|||||||| |||||| ||||||||||||||||||| |||||||||||||| | ||||| ||| |||| ||| ||||||||||||| |||||| ||||||| |
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| T |
51478309 |
agttagggctcacctgcatttgaaatttcaatggctgaggaagagaacaatgacatagtcacgtatatagtgaaaatcaaagtcatactcaccgtcccgg |
51478408 |
T |
|
| Q |
118 |
acctaaacgaactcattcctgatcatgatcatcga |
152 |
Q |
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||| | | |||| |||||||||||||||||||||| |
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| T |
51478409 |
acccagatgaacccattcctgatcatgatcatcga |
51478443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 316
Target Start/End: Original strand, 51454295 - 51454453
Alignment:
| Q |
158 |
acggtaccgttggagggtgatgacgtggcaccagctatcggtgttggcgctaaaatggcttcgttgaacgacgctgaaggtgacgacgtggcagcagcag |
257 |
Q |
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|||||||||||||||| || ||||||||||| |||| |||||||||| ||| ||| ||| |||||||| || | |||| |||| ||||||| | ||||| |
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| T |
51454295 |
acggtaccgttggaggatggtgacgtggcacaagctgtcggtgttggagctgaaacggcgtcgttgaaggatgatgaacgtgatgacgtggtggaagcag |
51454394 |
T |
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| Q |
258 |
ttgaagaatttgctcctggtcgagaaaaacaagctatggactttggcgccaaaatggtg |
316 |
Q |
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| T |
51454395 |
ctgaagaatctattcctgatcgagaaaaacaagccatgaatgttggcgccaaaacggtg |
51454453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 51454143 - 51454259
Alignment:
| Q |
34 |
catttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacactcacagtcccggacctaaacgaactcat |
133 |
Q |
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|||| |||||||||||||||||||||||||||||| || || ||| |||| ||| |||||||||||||||||||| |||| || | | |||| ||| |
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| T |
51454143 |
cattcgaaatttcaatggcggaggaagagaacaaccacacagtcacttatatagtgaaaatcaaagtcacactcaccctccctgattcagatgaacccat |
51454242 |
T |
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| Q |
134 |
tcctgatcatgatcatc |
150 |
Q |
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||||||||||||||||| |
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| T |
51454243 |
tcctgatcatgatcatc |
51454259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 218 - 310
Target Start/End: Original strand, 51474337 - 51474429
Alignment:
| Q |
218 |
tcgttgaacgacgctgaaggtgacgacgtggcagcagcagttgaagaatttgctcctggtcgagaaaaacaagctatggactttggcgccaaa |
310 |
Q |
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|||||||| |||| ||||||||| || ||||||||||||| |||||||| || ||||| ||||||||||||| ||||||| ||||||||||| |
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| T |
51474337 |
tcgttgaatgacggtgaaggtgatgatgtggcagcagcagctgaagaatatgttcctgatcgagaaaaacaaactatggatgttggcgccaaa |
51474429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 290
Target Start/End: Original strand, 51478479 - 51478609
Alignment:
| Q |
160 |
ggtaccgttggagggtgatgacgtggcaccagctatcggtgttggcgctaaaatggcttcgttgaacgacgctgaaggtgacgacgtggcagcagcagtt |
259 |
Q |
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|||||||||||||| || ||| ||||||| ||||||||||||||| ||| ||| ||| |||||||| |||| |||| |||| ||||||| | || || | |
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| T |
51478479 |
ggtaccgttggaggatggtgatgtggcacaagctatcggtgttggagctgaaacggcgtcgttgaaggacgatgaacgtgatgacgtggtggaagtagct |
51478578 |
T |
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| Q |
260 |
gaagaatttgctcctggtcgagaaaaacaag |
290 |
Q |
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||||||| || ||||| ||||| |||||||| |
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| T |
51478579 |
gaagaatctgttcctgatcgaggaaaacaag |
51478609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 42431704 - 42431626
Alignment:
| Q |
30 |
cctacatttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacactca |
108 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||| ||| | |||||||| || ||||||||||||||||||| |
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| T |
42431704 |
cctacattagaaatttcaatggcggaggaagagaacaacgacattgccacatatattgtgaaaatcaaagtcacactca |
42431626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 42433368 - 42433456
Alignment:
| Q |
34 |
catttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacactcacagtcccggaccta |
122 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| | ||||||| || ||||||||||||| |||| ||||| |||||| |
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| T |
42433368 |
catttgaaatttcaatggcggaggaagagaacaacgacattgtcacatatgttgtgcaaatcaaagtcaccctcattgtcccagaccta |
42433456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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