View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3203_high_9 (Length: 291)
Name: NF3203_high_9
Description: NF3203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3203_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 40 - 260
Target Start/End: Original strand, 8355265 - 8355477
Alignment:
| Q |
40 |
atactagtattatcaagagtttgacgctagttaatttc-tatgtctagataaattaatcagagagcattatatctagttctagttacaaaacctagtgtt |
138 |
Q |
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| T |
8355265 |
atactagtattatcaagagtttgacgctagttaatttcctatgtctagataaattaatcagagagcattatatctagttctagttacaaaacctagtgtt |
8355364 |
T |
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| Q |
139 |
aatagtgatttgtatatattttaaaattagtttagagttgatcaaacaataaaaatcattcaacacaagataatgaataaacaaaacatatttatagatt |
238 |
Q |
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| T |
8355365 |
aattgtgatttg----tattttaaaattagtttacagttgatcaaacaataaaaatcattcaacacaagataatgaat-----aaacatatttatagatt |
8355455 |
T |
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| Q |
239 |
gcattaaagaggactcatatat |
260 |
Q |
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| T |
8355456 |
gcattaaagaggactcatatat |
8355477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 46800960 - 46801027
Alignment:
| Q |
76 |
tctatgtctagataaattaatcagagagcattatatctagttctagttacaaaacctagtgttaatag |
143 |
Q |
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| T |
46800960 |
tctatgtctagataaattaattagataacattatacctattttaagttacaaaacataatgttaatag |
46801027 |
T |
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