View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3203_low_1 (Length: 461)
Name: NF3203_low_1
Description: NF3203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3203_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 7 - 453
Target Start/End: Original strand, 43089050 - 43089496
Alignment:
| Q |
7 |
cacctgttattccccaatctgattcgttataatttctttgatttggaatgtataactgagatggagtaacttgaagtggagaagaaagtgtttgaaatga |
106 |
Q |
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| T |
43089050 |
cacctgttattccccaatctgattcgttataatttctttgatttggaatgtataactgagatggagtaacttgaagtggagaagaaagtgtttgaaatga |
43089149 |
T |
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| Q |
107 |
agggtcatctccaaaatctgaaattgatgtattgcttcttctagaccttgattttggtcttccggtatcaacttctactatttttggacttccaatatca |
206 |
Q |
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| T |
43089150 |
agggtcatctccaaaatctgaaattgatgtattgcttcttctagaccttgattttggtcttccagtatcaacttctactatttttggacttccaatatca |
43089249 |
T |
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| Q |
207 |
taactgttcattgtagcatcaaaagatgatgataatcttctgctgtgaataggaattgaagctgtaaactcgttcctgttactctcactgtgattgtacc |
306 |
Q |
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| T |
43089250 |
taactgttcattgtagcatcaaaagatgatgataatcttctgctgtgaataggaattgaagctgtgtactcgttcctgttactctcattgtgattatacc |
43089349 |
T |
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| Q |
307 |
tttcctgcaaaataaaaatcataagaaatgtaaatattcaagtgatactaggaattagaatatgagatctgtttatgtattttaccgtggatcttctagc |
406 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43089350 |
tttcctgcaaaataacaatcataagaaatgtaaatattcaagtgatactaggaattaaaatatgagatctgtttatgtattttaccgtggatcttctagc |
43089449 |
T |
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| Q |
407 |
tcgtgtttgaaatctgttatttgtttcattctttgtgtttatgatga |
453 |
Q |
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| T |
43089450 |
ttgtgtttgaaatctgttatttgtttcattctttgtgcttatgatga |
43089496 |
T |
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