View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3203_low_3 (Length: 413)
Name: NF3203_low_3
Description: NF3203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3203_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 310 - 408
Target Start/End: Original strand, 3359144 - 3359242
Alignment:
| Q |
310 |
acttgaatcacaataccaactttatctatacatagtatacttgtctttctgtttctatcactggtcccttctcacaaaaattatttgtgattccggatt |
408 |
Q |
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| T |
3359144 |
acttgaattacaataccaactttatctatacatagtatacttgtctttctgtttctttcactggtcccttctcacaaaaattatttgtgaattcggatt |
3359242 |
T |
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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 3358300 - 3358351
Alignment:
| Q |
232 |
agtgtgacttgtgagagtaaccaagagtcttggtctttgatatattattttc |
283 |
Q |
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| T |
3358300 |
agtgtgacttgtgagagtaaccaagagtcttggtctttgatatattattttc |
3358351 |
T |
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