View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3203_low_4 (Length: 368)

Name: NF3203_low_4
Description: NF3203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3203_low_4
NF3203_low_4
[»] chr6 (7 HSPs)
chr6 (1-353)||(6395232-6395584)
chr6 (60-273)||(14821138-14821351)
chr6 (33-193)||(6399658-6399818)
chr6 (34-346)||(6426912-6427221)
chr6 (60-119)||(8913661-8913720)
chr6 (60-111)||(6596546-6596597)
chr6 (307-351)||(6423906-6423950)
[»] chr1 (7 HSPs)
chr1 (60-177)||(29691002-29691119)
chr1 (60-177)||(29718514-29718631)
chr1 (60-177)||(29658487-29658604)
chr1 (50-119)||(33160945-33161014)
chr1 (60-119)||(52093225-52093284)
chr1 (60-170)||(30827546-30827656)
chr1 (308-341)||(19467452-19467485)
[»] chr7 (2 HSPs)
chr7 (5-151)||(15091714-15091860)
chr7 (308-351)||(10615715-10615758)
[»] chr5 (1 HSPs)
chr5 (302-346)||(20477456-20477500)
[»] chr4 (5 HSPs)
chr4 (308-351)||(3437631-3437674)
chr4 (314-353)||(7225170-7225209)
chr4 (308-346)||(571332-571370)
chr4 (314-351)||(553767-553804)
chr4 (306-351)||(661858-661903)
[»] chr8 (2 HSPs)
chr8 (308-354)||(17642943-17642989)
chr8 (308-354)||(32151970-32152016)
[»] chr3 (2 HSPs)
chr3 (63-119)||(514317-514373)
chr3 (51-111)||(51764046-51764106)
[»] chr2 (1 HSPs)
chr2 (308-351)||(1036622-1036665)


Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 6395232 - 6395584
Alignment:
1 agcaaaggacagtttctaacgagtgnnnnnnnggttgtttctgtgagataacaaccataaaggtttatagataccaaattaccaagaaacaaagagaaat 100  Q
    |||||||||||||||||||||||||       |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
6395232 agcaaaggacagtttctaacgagtgaaaaaaaggttgtttctgtgagataaccaccacaaaggtttatagataccaaattaccaagaaacaaagagaaat 6395331  T
101 caacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacatggagacttggatagcagacggtgaattgtattaacgaagtt 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6395332 caacaacatgttgatcatttagactagtaatgtgacaaagttccaaatgttgtatacatggagacttggatagcagacggtgaattgtattaacgaagtt 6395431  T
201 agtctgattgtcataggtgaccaaagggaaatagatgatgagttttgtgagcaaagggaaacaatcaacaatatctgtcagactgttctcgaaaaaataa 300  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
6395432 agtctgattgtcataggcgaccaaagggaaatagatgatgagttttgtgagcaaagggaaacaatcaacaatgtctgtcagactgttctcgaaaaaataa 6395531  T
301 acacagtaacaactgagagaggtcaaagttgtaatattttgggagagagcttg 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
6395532 acacagtaacaactgagagaggtcaaagttgtaatattttgggagagagcttg 6395584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 60 - 273
Target Start/End: Original strand, 14821138 - 14821351
Alignment:
60 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat 159  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||| ||  | ||     ||||||||||||||||||||||    
14821138 aaggtttatagataccaaattaccaagacacaaacaaaaatcaacaacatgttgattatttagaaaataagtgctttgaagttccaaatgttgtatacat 14821237  T
160 ggagacttggatagcagacggtgaattgtattaacgaagttagtctgattgtcataggtgaccaaagggaaatagatgatgagttttgtgagcaaaggga 259  Q
    ||||||||||||| |||||| ||||||||| |||| |||||||||| |||||  | || ||||  ||||  | ||||| |||||| | |||||||||| |    
14821238 ggagacttggataacagacgttgaattgtactaacaaagttagtctcattgttcttggggaccttagggcgacagatgttgagttctttgagcaaaggaa 14821337  T
260 aacaatcaacaata 273  Q
    ||||||||||||||    
14821338 aacaatcaacaata 14821351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 6399658 - 6399818
Alignment:
33 ggttgtttctgtgagataacaac---cataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagta 129  Q
    |||||||||||||||||||||||   ||  |||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||   ||  |    
6399658 ggttgtttctgtgagataacaacaagcaccaaggtttacagacaccaaattactaagaaacacagagaaatcaacaacatgttgatcattta---aatca 6399754  T
130 atgtgacaaagttccaaatgttgtatacatggagacttggatagcagacggtgaattgtattaa 193  Q
     ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
6399755 gtgttacaaagttccaaatattgtatacatggagacttggataacagacggtgaattgtattaa 6399818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 34 - 346
Target Start/End: Original strand, 6426912 - 6427221
Alignment:
34 gttgtttctgtgagataa---caaccataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaa 130  Q
    |||||||||||||||| |   ||||||  |||||||||||| ||||| ||||||| ||||||| | |  ||| ||||| |||||||  ||||| ||| |     
6426912 gttgtttctgtgagatgatgacaaccactaaggtttatagacaccaacttaccaaaaaacaaacacatctcatcaacaagttgatcggttagaaaagaag 6427011  T
131 tgtgacaaagttccaaatgttgtatacatggagacttggatagcagacggtgaattgtattaacgaagttagtctgattgtcataggtgaccaaagggaa 230  Q
    |   || ||||||||||||||||||||||||| ||||||||| || || |||||||| ||||| |||||||| || |||      | |||||||||||      
6427012 tactacgaagttccaaatgttgtatacatggacacttggataacatacagtgaattgaattaatgaagttaggcttatt------gatgaccaaagggtg 6427105  T
231 atagatgatgagttttgtgagcaaagggaaacaatcaacaatatctgtcagactgttctcgaaaaaataaacacagtaacaactgagagaggtcaaagtt 330  Q
    || || | |||||| | |||||||||||||||||||||||||   || ||||  ||| |   | ||| ||  || ||||||| ||||| |||||||||||    
6427106 atggaggttgagttgtttgagcaaagggaaacaatcaacaatgggtgacagatcgttgttacagaaaaaagtaccgtaacaagtgagaaaggtcaaagtt 6427205  T
331 gtaatattttgggaga 346  Q
    ||||||||||||||||    
6427206 gtaatattttgggaga 6427221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 8913720 - 8913661
Alignment:
60 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatt 119  Q
    |||||||||||| ||||||||||||||||||||||| || |  |||||||||||||||||    
8913720 aaggtttatagacaccaaattaccaagaaacaaagacaacttgacaacatgttgatcatt 8913661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 6596597 - 6596546
Alignment:
60 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgt 111  Q
    |||||||||||| ||||||| ||||||||||||||||||  || ||||||||    
6596597 aaggtttatagaaaccaaatcaccaagaaacaaagagaacccagcaacatgt 6596546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 6423906 - 6423950
Alignment:
307 taacaactgagagaggtcaaagttgtaatattttgggagagagct 351  Q
    |||||| ||||||||||||||||||| || |||||||||| ||||    
6423906 taacaagtgagagaggtcaaagttgttatgttttgggagaaagct 6423950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 29691119 - 29691002
Alignment:
60 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat 159  Q
    |||||||||||| ||||||| | |||||||||||||||| ||  |||||||||||||||| ||| || || |||||| ||| ||||||||||||||| ||    
29691119 aaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatat 29691020  T
160 ggagacttggatagcaga 177  Q
    ||||| ||||||| ||||    
29691019 ggagagttggataacaga 29691002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 29718631 - 29718514
Alignment:
60 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat 159  Q
    |||||||||||| ||||||| | |||||||||||||||| ||  |||||||||||||||| ||| || || |||||| ||| ||||||||||||||| ||    
29718631 aaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatat 29718532  T
160 ggagacttggatagcaga 177  Q
    ||||| ||||||| ||||    
29718531 ggagagttggataacaga 29718514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 29658604 - 29658487
Alignment:
60 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat 159  Q
    |||||||||||| ||||||| | |||||||||||||||| ||  |||||||||||||||| ||| |  || || ||| ||| ||||||||||||||| |     
29658604 aaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaacttagtgcgactaagatccaaatgttgtatatac 29658505  T
160 ggagacttggatagcaga 177  Q
    ||||| ||||||| ||||    
29658504 ggagagttggataacaga 29658487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 33160945 - 33161014
Alignment:
50 aacaaccataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatt 119  Q
    |||| |||| |||||||||||| ||||||  | |||||||||||||||| ||  ||||||||||||||||    
33160945 aacatccattaaggtttatagacaccaaagcagcaagaaacaaagagaactcggcaacatgttgatcatt 33161014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 52093225 - 52093284
Alignment:
60 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatt 119  Q
    |||||||||||| |||||||||||||||| |||||| ||  |||||| || |||||||||    
52093225 aaggtttatagacaccaaattaccaagaaccaaagacaacccaacaatatcttgatcatt 52093284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 30827546 - 30827656
Alignment:
60 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat 159  Q
    |||||||||||| || |||| |  ||||| ||||||||| ||  |||||||||||||||| ||| ||  | ||  || ||| ||||||||||||||| ||    
30827546 aaggtttatagacactaaatgaggaagaagcaaagagaagtcggcaacatgttgatcattgagaaaacaagtgaaactaagatccaaatgttgtatatat 30827645  T
160 ggagacttgga 170  Q
    ||||| |||||    
30827646 ggagagttgga 30827656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 19467485 - 19467452
Alignment:
308 aacaactgagagaggtcaaagttgtaatattttg 341  Q
    ||||| ||||||||||||||||||||||||||||    
19467485 aacaagtgagagaggtcaaagttgtaatattttg 19467452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 15091860 - 15091714
Alignment:
5 aaggacagtttctaacgagtgnnnnnnnggttgtttctgtgagataacaac---cataaaggtttatagataccaaattaccaagaaacaaagagaaatc 101  Q
    |||||||||||||| ||||||       ||||||||||||||||| || ||   ||| |||||||||||| |||||||||| |||||| | |||||||||    
15091860 aaggacagtttctaccgagtgaaaacaaggttgtttctgtgagattacgacaagcattaaggtttatagacaccaaattactaagaaatagagagaaatc 15091761  T
102 aacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgtt 151  Q
    ||||||||||||||||||   | || || ||| |||||||||||||||||    
15091760 aacaacatgttgatcatt---aaaactagtgttacaaagttccaaatgtt 15091714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 351
Target Start/End: Original strand, 10615715 - 10615758
Alignment:
308 aacaactgagagaggtcaaagttgtaatattttgggagagagct 351  Q
    ||||| |||||||||||||||||||||| |||||||||| ||||    
10615715 aacaagtgagagaggtcaaagttgtaatcttttgggagaaagct 10615758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 20477500 - 20477456
Alignment:
302 cacagtaacaactgagagaggtcaaagttgtaatattttgggaga 346  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||    
20477500 cacaggaacaactgagagaggtcaaagttttaatattttgggaga 20477456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 308 - 351
Target Start/End: Complemental strand, 3437674 - 3437631
Alignment:
308 aacaactgagagaggtcaaagttgtaatattttgggagagagct 351  Q
    |||||||||||||||||||||||||||| |||||||||| ||||    
3437674 aacaactgagagaggtcaaagttgtaatcttttgggagaaagct 3437631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 353
Target Start/End: Complemental strand, 7225209 - 7225170
Alignment:
314 tgagagaggtcaaagttgtaatattttgggagagagcttg 353  Q
    |||||||||||||||||||||||||||| || ||||||||    
7225209 tgagagaggtcaaagttgtaatattttgagaaagagcttg 7225170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 571332 - 571370
Alignment:
308 aacaactgagagaggtcaaagttgtaatattttgggaga 346  Q
    ||||| ||||||| |||||||||||||||||||||||||    
571332 aacaattgagagatgtcaaagttgtaatattttgggaga 571370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 553767 - 553804
Alignment:
314 tgagagaggtcaaagttgtaatattttgggagagagct 351  Q
    |||||||||||||||||||||| |||||||||| ||||    
553767 tgagagaggtcaaagttgtaatgttttgggagaaagct 553804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 661858 - 661903
Alignment:
306 gtaacaactgagagaggtcaaagttgtaatattttgggagagagct 351  Q
    ||||||| |||||||||| ||||||||||||| |||||||| ||||    
661858 gtaacaaatgagagaggttaaagttgtaatatattgggagaaagct 661903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 354
Target Start/End: Complemental strand, 17642989 - 17642943
Alignment:
308 aacaactgagagaggtcaaagttgtaatattttgggagagagcttgt 354  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||||||    
17642989 aacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgt 17642943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 354
Target Start/End: Original strand, 32151970 - 32152016
Alignment:
308 aacaactgagagaggtcaaagttgtaatattttgggagagagcttgt 354  Q
    ||||| |||||||||||||||||||||| |||||||||| |||||||    
32151970 aacaagtgagagaggtcaaagttgtaatgttttgggagaaagcttgt 32152016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 514373 - 514317
Alignment:
63 gtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatt 119  Q
    ||||||||| | ||||| |||||||||||| || ||||| |||||||||||||||||    
514373 gtttatagacaacaaatgaccaagaaacaatgacaaatccacaacatgttgatcatt 514317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 51764106 - 51764046
Alignment:
51 acaaccataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgt 111  Q
    |||||||  ||||||||| || |||||||||| |||||||||||| ||||  |||||||||    
51764106 acaaccactaaggtttatggacaccaaattactaagaaacaaagacaaatttacaacatgt 51764046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 351
Target Start/End: Complemental strand, 1036665 - 1036622
Alignment:
308 aacaactgagagaggtcaaagttgtaatattttgggagagagct 351  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||    
1036665 aacaaatgagagaagtcaaagttgtaatattttgggagaaagct 1036622  T

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