View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3203_low_5 (Length: 349)
Name: NF3203_low_5
Description: NF3203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3203_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 8354986 - 8354629
Alignment:
| Q |
1 |
cattattaaaggagcaatccgagtaat--tcaaggataggatag-----ataagtaatcttattaaaatagatagactagggtgtatatttgaactgtgt |
93 |
Q |
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| T |
8354986 |
cattattaaaggaccaatccgagtaatattcaaggataggataggatagataagtaatcttattaaaatagatagactagggtgtatttttgaactgagt |
8354887 |
T |
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| Q |
94 |
ctcttacaacaacaaaaacaaaacagttatccatgatatatctat------------cattcccaaagcaaaaggttttaggtt-----gcaggggaagc |
176 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||| |
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| T |
8354886 |
ct--tacaacaacaaaaacaaaacagttatccatgatatatatatatatatatatatcattcccaaagcaaagggttttaggttaggttgcaggggaagc |
8354789 |
T |
|
| Q |
177 |
attagcaatgtcaatgacaaaacggtaacgaacatcattcttcacaagacgctgaaaagcttcattgattgtatcagctttgattaattcaatgtcacat |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8354788 |
attagcaatgtcaatgacaaaacggtaacgaacatcattcttcaaaagacgctgaaaagcttcattgattgtatcagctttgattaattcaatgtcacat |
8354689 |
T |
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| Q |
277 |
gtgatattatgcttcccacaaacatccaacatttcttgagtctcttttattcctcctatg |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8354688 |
gtgatattatgcttcccacaaacatccaacatttcttgagtctcttttattcctcctatg |
8354629 |
T |
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