View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3203_low_7 (Length: 321)
Name: NF3203_low_7
Description: NF3203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3203_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 17103869 - 17104152
Alignment:
| Q |
18 |
agaagtggatctagagctttgagtaacatcaaccttagcagaagaatcaagacaattacccatcagtctctgacacaattcttaacaacaactctcttct |
117 |
Q |
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| T |
17103869 |
agaagtggatctagagctttgagcagcatcaaccttagcagaagaatcaagacaattacccatcagtctctgacacaattcttaacaacaactctcttct |
17103968 |
T |
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| Q |
118 |
gaaccacttcaactgctataagtacacaacagaaaaagaggtaaacaagaaaaaagcagtgacttttccaaagggaattttgtgtggtggaagaaaaaag |
217 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17103969 |
gaaccacttcaactgttataagtacacaacagaaaaagaggtaaacaag-aaaaagcagtgacttttccaaagggaattttgtgtggtggaagaaaaaag |
17104067 |
T |
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| Q |
218 |
gaacaaaattttgtgttaagaaagaaacataagaagaaatgaacatgtcatgtgaaaggaacacatgtttttagattcgcctatg |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17104068 |
gaacaaaattttgtgttaagaaagaaacataagaagaaatgaacatgtcatgtgaaaggaacacatgtttttagattcgcctatg |
17104152 |
T |
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