View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3205_high_2 (Length: 488)
Name: NF3205_high_2
Description: NF3205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3205_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 34521872 - 34521400
Alignment:
| Q |
1 |
tcttggtgagcaacaaaatgtccattgggttctcttttaagaatctgtcttgcatcagattttattgacacggatgaagaaaataacggttatgatagca |
100 |
Q |
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|||||||||| |||||| ||| | |||| ||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34521872 |
tcttggtgagatacaaaaggtctagtggggtctcttttaagaaactgtcttgtatcagattttattcacacggatgaagaaaataacggttatgatagca |
34521773 |
T |
|
| Q |
101 |
agaattgagaaatactgcaaaactaaataaatttttgaaggttccatcaaccttatatatatggtaatagtgttgacttatgttaatatgacactagttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34521772 |
agaattgagaaatactgcaaaactaaataaatttttgaaggttccatcaaccttatatatatggtaatagtgttgacttatgttaatatgacactagttt |
34521673 |
T |
|
| Q |
201 |
tttcctttggtaaatgcagtatatatgtactgtgtgcatgtgcatgaagtatatagctcatttataactctgtaccattacagcaactaatctgttatgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34521672 |
tttcctttggtaaatgcagtatatatgtactgtgtgcatgtgcatgaagtatatagctcatttataactctgtaccattacagcaactaatctgttatgc |
34521573 |
T |
|
| Q |
301 |
agaaagtcttatttaattgttttctactttgagcttatagtagtaatttatgtttttaagatatatacaaaatgaatgtgatgagaagtgaagttagtat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34521572 |
agaaagtcttatttaattgttttctactttgagcttatagtagtaatttatgtttttaagatatatacaaaatgaatgtgatgagaagtgaagttagtat |
34521473 |
T |
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| Q |
401 |
aggttttgattcacttttggggagaacacaaagtgtttttaaagatttgaaattgattttatatgtttgggat |
473 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34521472 |
aggttttgattcacttttggggagagcacaaagtgtttttaaagatttgaaattgattttatatgtttgggat |
34521400 |
T |
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