View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3205_high_3 (Length: 415)

Name: NF3205_high_3
Description: NF3205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3205_high_3
NF3205_high_3
[»] chr3 (2 HSPs)
chr3 (13-396)||(38213980-38214363)
chr3 (13-396)||(38218199-38218582)
[»] chr8 (5 HSPs)
chr8 (13-247)||(42991291-42991523)
chr8 (54-247)||(35017979-35018172)
chr8 (348-385)||(42991177-42991214)
chr8 (111-152)||(33811108-33811149)
chr8 (330-379)||(35017850-35017899)
[»] chr7 (4 HSPs)
chr7 (70-199)||(37188902-37189031)
chr7 (81-142)||(32715057-32715118)
chr7 (81-142)||(32709835-32709896)
chr7 (81-142)||(32718435-32718496)
[»] chr6 (2 HSPs)
chr6 (78-142)||(10411404-10411468)
chr6 (78-142)||(10379762-10379826)
[»] chr4 (6 HSPs)
chr4 (84-200)||(53492975-53493091)
chr4 (84-199)||(53499268-53499383)
chr4 (110-183)||(53495378-53495451)
chr4 (92-178)||(53488672-53488758)
chr4 (111-181)||(53502408-53502478)
chr4 (84-199)||(52591013-52591128)
[»] chr2 (2 HSPs)
chr2 (87-178)||(16942656-16942747)
chr2 (87-178)||(17013321-17013412)
[»] chr1 (1 HSPs)
chr1 (111-152)||(47495928-47495969)


Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 396
Target Start/End: Original strand, 38213980 - 38214363
Alignment:
Q  13 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38213980 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 38214079  T
Q  113 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214080 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 38214179  T
Q  213 atccttattggggtgttgtcaaccaaaaatctgcatttagttacatgaacttgttagagtgtttgttatacacacataattgagttctttatacaaacac 312  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  38214180 atccttattggggtgttgtcaaccaaaaatctgcaattagttacatgaacttgttagcgtgtttgttataagcacataattgagttctttatacaaacac 38214279  T
Q  313 gaacttaaatatatattacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaacc 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214280 gaacttaaatatatattacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaacc 38214363  T

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Target: chr3; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 396
Target Start/End: Original strand, 38218199 - 38218582
Alignment:
Q  13 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218199 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 38218298  T
Q  113 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218299 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 38218398  T
Q  213 atccttattggggtgttgtcaaccaaaaatctgcatttagttacatgaacttgttagagtgtttgttatacacacataattgagttctttatacaaacac 312  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  38218399 atccttattggggtgttgtcaaccaaaaatctgcaattagttacatgaacttgttagcgtgtttgttataagcacataattgagttctttatacaaacac 38218498  T
Q  313 gaacttaaatatatattacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaacc 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218499 gaacttaaatatatattacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaacc 38218582  T

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Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 42991523 - 42991291
Alignment:
Q  13 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 112  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42991523 cagagaaggaagtggaagagacag--gataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaacc 42991426  T
Q  113 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 212  Q
    |||||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  42991425 acctcttgtagcccaatcttcagcgttccaaagacttgaatatattctcatcggttggttctttgggaaaggaatactaatagattcagcattcttgaag 42991326  T
Q  213 atccttattggggtgttgtcaaccaaaaatctgca 247  Q
    |||||||||||| ||||||||||||| ||||||||    
T  42991325 atccttattgggatgttgtcaaccaagaatctgca 42991291  T

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Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 35018172 - 35017979
Alignment:
Q  54 ttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaat 153  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || || ||||    
T  35018172 ttgaaattacggtagtatgctgtaaagggtgctttggaccaatcagttttcaccaatccacctcttgtggcccaatcatcagcattccacaggctggaat 35018073  T
Q  154 agattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaagatccttattggggtgttgtcaaccaaaaatctgca 247  Q
    ||||||||||||||||||||||||| || |||| |||||| |||||| |||||||||| | |||||||||  |||| |||||||| ||||||||    
T  35018072 agattctcattggttggttctttggaaaaggaacaccaatagattcaacattcttgaatacccttattggcatgttatcaaccaagaatctgca 35017979  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 348 - 385
Target Start/End: Complemental strand, 42991214 - 42991177
Alignment:
Q  348 ggcttccagatgatagagtaagtgtggaagttcttggt 385  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42991214 ggcttccagatgatagagtaagtgtggaagttcttggt 42991177  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 33811108 - 33811149
Alignment:
Q  111 ccacctcttgtagcccaatcatcagcattccagagacttgaa 152  Q
    ||||||||||||||||||||||| |||||||| | |||||||    
T  33811108 ccacctcttgtagcccaatcatctgcattccatacacttgaa 33811149  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 379
Target Start/End: Complemental strand, 35017899 - 35017850
Alignment:
Q  330 acttacataatgtgttgtggcttccagatgatagagtaagtgtggaagtt 379  Q
    |||||||| |||||||| || ||||| ||||| |||||||||||||||||    
T  35017899 acttacatgatgtgttggggtttccaaatgatggagtaagtgtggaagtt 35017850  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 37189031 - 37188902
Alignment:
Q  70 aagctgtaaagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttg 169  Q
    |||| ||||| || || ||||||||||| || || || |  |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  37189031 aagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtagcccaatcatcagcattccaaagactagaatagattctcattggttg 37188932  T
Q  170 gttctttgggaatggaataccaattgattc 199  Q
    | | || |||||||||| |||| |||||||    
T  37188931 gcttttggggaatggaacaccatttgattc 37188902  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 32715118 - 32715057
Alignment:
Q  81 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 142  Q
    |||||||| |||||||| |||||| |||||||||||||||| ||||||||||| ||||||||    
T  32715118 ggtgcttttgaccaatctgttttctccaaaccacctcttgtggcccaatcatctgcattcca 32715057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 32709896 - 32709835
Alignment:
Q  81 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 142  Q
    ||||||||||||||||| |||||| | || ||||||||||| ||||||||||| ||||||||    
T  32709896 ggtgctttggaccaatctgttttctctaatccacctcttgttgcccaatcatctgcattcca 32709835  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 32718496 - 32718435
Alignment:
Q  81 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 142  Q
    |||||||| ||||||||||||||  | || ||||| ||||| ||||||||||| ||||||||    
T  32718496 ggtgcttttgaccaatcagttttttctaatccaccccttgtggcccaatcatctgcattcca 32718435  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 10411468 - 10411404
Alignment:
Q  78 aagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 142  Q
    |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||    
T  10411468 aagggtgctttggaccaatctgttttctccaaaccaccccttgtagcccaatcatcagcattcca 10411404  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 10379762 - 10379826
Alignment:
Q  78 aagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 142  Q
    |||||||||||||||||||| |||||| | |||||||| ||||| ||||||||||||||||||||    
T  10379762 aagggtgctttggaccaatctgttttctctaaaccaccccttgtggcccaatcatcagcattcca 10379826  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 53493091 - 53492975
Alignment:
Q  84 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatg 183  Q
    |||||||||||||| || || || |  || |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| || |||||||    
T  53493091 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaatg 53492992  T
Q  184 gaataccaattgattca 200  Q
    |||  ||| ||||||||    
T  53492991 gaacgccacttgattca 53492975  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 53499383 - 53499268
Alignment:
Q  84 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatg 183  Q
    |||||||||||||| || || || |  || |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| || |||||||    
T  53499383 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaatg 53499284  T
Q  184 gaataccaattgattc 199  Q
    | | |||| |||||||    
T  53499283 gtacaccatttgattc 53499268  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 53495451 - 53495378
Alignment:
Q  110 accacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatg 183  Q
    |||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||| |||||||| ||||    
T  53495451 accacctcttgttgcccaatcatcagcattccatagacttgaatatatcctcattggttgattctttggaaatg 53495378  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 53488672 - 53488758
Alignment:
Q  92 ccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgg 178  Q
    |||||| |||||||| | |||||||||||| ||||||||||| |||||||| ||||||||||| | ||||||||| || ||||||||    
T  53488672 ccaatctgttttcacaagaccacctcttgttgcccaatcatcggcattccatagacttgaatataatctcattggctgcttctttgg 53488758  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 53502478 - 53502408
Alignment:
Q  111 ccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaa 181  Q
    ||||||||||| ||||| | ||| |||||||| | ||||||||| ||||||||||||||||||||||||||    
T  53502478 ccacctcttgttgcccagttatctgcattccacaaacttgaatatattctcattggttggttctttgggaa 53502408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 52591128 - 52591013
Alignment:
Q  84 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatg 183  Q
    |||| |||||||||||||||| | | ||| || ||||| ||||||| ||| |||| ||| ||||||||||| || ||||||| |||| | || || || |    
T  52591128 gcttgggaccaatcagttttcgctagacctccccttgtggcccaattatctgcatcccaaagacttgaatatatactcattgcttggcttttaggaaaag 52591029  T
Q  184 gaataccaattgattc 199  Q
    |||||||  |||||||    
T  52591028 gaataccttttgattc 52591013  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 16942747 - 16942656
Alignment:
Q  87 ttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgg 178  Q
    |||| |||||| |||||||| |  |||||||| || ||||||| ||| |||||||| ||||||||||| || ||||| | ||||||||||||    
T  16942747 ttggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatatatcctcatggcttggttctttgg 16942656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 17013412 - 17013321
Alignment:
Q  87 ttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgg 178  Q
    |||| |||||| |||||||| |  |||||||| || ||||||| ||| |||||||| ||||||||||| || ||||| | ||||||||||||    
T  17013412 ttggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatatatcctcatggcttggttctttgg 17013321  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 47495969 - 47495928
Alignment:
Q  111 ccacctcttgtagcccaatcatcagcattccagagacttgaa 152  Q
    ||||||||||||||||||||||| |||||||| | |||||||    
T  47495969 ccacctcttgtagcccaatcatctgcattccatacacttgaa 47495928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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