View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3205_high_5 (Length: 292)
Name: NF3205_high_5
Description: NF3205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3205_high_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 33115200 - 33115476
Alignment:
| Q |
16 |
aacttaagcacttgcagaaattcagtatgagtttgggattaattcagtatgtgaagttgctaataaaggaaatgaaatcccttagaaggtctcagtcgtc |
115 |
Q |
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| T |
33115200 |
aacttaagcacttgcagaaattcggtatgagtttgggattaattcggtatgtgaagttgctaataaaggaagtgaaatcccttagaaggtctcagtcgtc |
33115299 |
T |
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| Q |
116 |
aaacaagtggtgcaacgatggagggaaaaacgcacgtggaggcatccagatttttctttctggcaggttcagaggcaattcaggcacttcataaactctg |
215 |
Q |
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| T |
33115300 |
aaacaagtggtgcaacgatggagggaaaaacgcacgtggaggcatccagatttttctttctggcaggttcagaggcaattcaggcacttcataaactcta |
33115399 |
T |
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| Q |
216 |
tcaataaactcataccagtcatccatgcctaatagagaactaacaaacggcttaacttcaaaaacttcaaactcatc |
292 |
Q |
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| T |
33115400 |
tcaataaactcataccagtcatccatgcctaatagagaactaacaaacggcttaacttcaaaaacttcaaactcatc |
33115476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 114 - 292
Target Start/End: Original strand, 33167015 - 33167193
Alignment:
| Q |
114 |
tcaaacaagtggtgcaacgatggagggaaaaacgcacgtggaggcatccagatttttctttctggcaggttcagaggcaattcaggcacttcataaactc |
213 |
Q |
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| T |
33167015 |
tcaaaaaagttgtgcaacgatggaggaaaaaatgctagtgaaggtcggcggatttttctttctggcaagttttgaggcaattcaggcacttcataaactt |
33167114 |
T |
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| Q |
214 |
tgtcaataaactcataccagtcatccatgcctaatagagaactaacaaacggcttaacttcaaaaacttcaaactcatc |
292 |
Q |
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| T |
33167115 |
tgtccataaactcggaccagtcacccatgcctaatagacgactaacaaacgacttaacttcaaaagcttcaaactcatc |
33167193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 44834977 - 44834933
Alignment:
| Q |
67 |
tgaagttgctaataaaggaaatgaaatcccttagaaggtctcagt |
111 |
Q |
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| T |
44834977 |
tgaagttgctagtaaaggaagtgaaatcccttagaagctctcagt |
44834933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 44827275 - 44827230
Alignment:
| Q |
243 |
cctaatagagaactaacaaacggcttaacttcaaaaacttcaaact |
288 |
Q |
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| T |
44827275 |
cctaatagacgactaacaaacggctgaacttcaaatacttcaaact |
44827230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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