View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3205_high_7 (Length: 276)
Name: NF3205_high_7
Description: NF3205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3205_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 170 - 267
Target Start/End: Complemental strand, 24566981 - 24566884
Alignment:
| Q |
170 |
ctccatattcagaattttgatttcaattcacctttttgaagccttctcttcctcttgcgttaacaaaaattataagtaacttctctcatataatcttt |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24566981 |
ctccatattcagaattttgatttcaattcacctttttgaagtcttctcttcctcttgcgttaacaaaaattataagtaacttctctcatataatcttt |
24566884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 142 - 267
Target Start/End: Complemental strand, 16615473 - 16615348
Alignment:
| Q |
142 |
tgggaaaatgtatgcaggttgagagactctccatattcagaattttgatttcaattcacctttttgaagccttctcttcctcttgcgttaacaaaaatta |
241 |
Q |
| |
|
|||||| |||||| | | ||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| | |
|
|
| T |
16615473 |
tgggaagatgtatacggattgagagaccctccatattcagaattttgatttcaattcaagtttttgaagtcttctcttcctcttacgttaacaaaaatca |
16615374 |
T |
|
| Q |
242 |
taagtaacttctctcatataatcttt |
267 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
16615373 |
taagtaacttctctcatatcatcttt |
16615348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 16615671 - 16615550
Alignment:
| Q |
20 |
gatgaatagtgtacaagcaccaaaattgttgcatgcaaatcattgaagaagagtaagta-----ttataatttttccgaaagaacaaattacttttgtct |
114 |
Q |
| |
|
|||||||| ||| |||||| | |||||||||||||||| ||| ||||||| |||||||| |||||| |||||||||||||||||||| |||||||| |
|
|
| T |
16615671 |
gatgaatattgtgcaagcaacgaaattgttgcatgcaattcaatgaagaatagtaagtactttattataacttttccgaaagaacaaattatttttgtct |
16615572 |
T |
|
| Q |
115 |
gactcaaacttgcattgaatta |
136 |
Q |
| |
|
||||| ||||||||| |||||| |
|
|
| T |
16615571 |
gactctaacttgcatcgaatta |
16615550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 142 - 261
Target Start/End: Original strand, 45532241 - 45532360
Alignment:
| Q |
142 |
tgggaaaatgtatgcaggttgagagactctccatattcagaattttgatttcaattcacctttttgaagccttctcttcctcttgcgttaacaaaaatta |
241 |
Q |
| |
|
|||||| |||||| | | ||||||||| ||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||| | |
|
|
| T |
45532241 |
tgggaagatgtatacggattgagagaccctccatatttagaattttgatttcaattcaagtttttgaagtcttctcttcctcttaccttaacaaaaatca |
45532340 |
T |
|
| Q |
242 |
taagtaacttctctcatata |
261 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
45532341 |
taagtaacttctctcatata |
45532360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 45532060 - 45532162
Alignment:
| Q |
20 |
gatgaatagtgtacaagcaccaaaattgttgcatgcaaatcattgaagaagagtaagta-----ttataatttttccgaaagaacaaattacttttgtct |
114 |
Q |
| |
|
|||||||| ||| ||||| | |||||||||||||||| ||| ||||||| |||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45532060 |
gatgaatattgtgaaagcaacgaaattgttgcatgcaattcaatgaagaatagtaagtactttattataacttttccgaaagaacaaattacttttgtct |
45532159 |
T |
|
| Q |
115 |
gac |
117 |
Q |
| |
|
||| |
|
|
| T |
45532160 |
gac |
45532162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University