View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3205_low_10 (Length: 221)
Name: NF3205_low_10
Description: NF3205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3205_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 23689580 - 23689766
Alignment:
| Q |
16 |
atgaacaaagaaaggctgttggtgtttaccacgtcgagtacatggctgattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgca |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23689580 |
atgaacaaagaaaagctgttggtgtttaccacgtcgagtacatggctgattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgca |
23689679 |
T |
|
| Q |
116 |
agaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaacgtaagggcatgtgtttcttctgatgaagacaa |
202 |
Q |
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| T |
23689680 |
agaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaacgtaaaggcatgtgtttcttctgatgaagacaa |
23689766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 24061817 - 24062003
Alignment:
| Q |
16 |
atgaacaaagaaaggctgttggtgtttaccacgtcgagtacatggctgattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgca |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24061817 |
atgaacaaagaaaagctgttggtgtttaccacgtcgagtacatggctgattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgca |
24061916 |
T |
|
| Q |
116 |
agaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaacgtaagggcatgtgtttcttctgatgaagacaa |
202 |
Q |
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| T |
24061917 |
agaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaacgtaaaggcatgtgtttcttctgatgaagacaa |
24062003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 23693038 - 23693224
Alignment:
| Q |
16 |
atgaacaaagaaaggctgttggtgtttaccacgtcgagtacatggctgattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgca |
115 |
Q |
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|||||||||||| || |||||||||||| |||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23693038 |
atgaacaaagaagagcggttggtgtttacgacgttgaatacttggctgattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgca |
23693137 |
T |
|
| Q |
116 |
agaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaacgtaagggcatgtgtttcttctgatgaagacaa |
202 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||| |
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| T |
23693138 |
agaacttggttggattttaacagttccaacaccttatgtttttcttgttagaaacataagggcatgtaatttatcggatgaagacaa |
23693224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 23711478 - 23711664
Alignment:
| Q |
16 |
atgaacaaagaaaggctgttggtgtttaccacgtcgagtacatggctgattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgca |
115 |
Q |
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|
|||||||||||| || |||||||||||| |||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23711478 |
atgaacaaagaagagcggttggtgtttacgacgttgaatacttggctgattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgca |
23711577 |
T |
|
| Q |
116 |
agaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaacgtaagggcatgtgtttcttctgatgaagacaa |
202 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||| |
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| T |
23711578 |
agaacttggttggattttaacagttccaacaccttatgtttttcttgttagaaacataagggcatgtaatttatcggatgaagacaa |
23711664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 23729934 - 23730120
Alignment:
| Q |
16 |
atgaacaaagaaaggctgttggtgtttaccacgtcgagtacatggctgattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgca |
115 |
Q |
| |
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|||||||||||| || |||||||||||| |||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23729934 |
atgaacaaagaagagcggttggtgtttacgacgttgaatacttggctgattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgca |
23730033 |
T |
|
| Q |
116 |
agaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaacgtaagggcatgtgtttcttctgatgaagacaa |
202 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||| |
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| T |
23730034 |
agaacttggttggattttaacagttccaacaccttatgtttttcttgttagaaacataagggcatgtaatttatcggatgaagacaa |
23730120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 23748389 - 23748575
Alignment:
| Q |
16 |
atgaacaaagaaaggctgttggtgtttaccacgtcgagtacatggctgattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgca |
115 |
Q |
| |
|
|||||||||||| || |||||||||||| |||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23748389 |
atgaacaaagaagagcggttggtgtttacgacgttgaatacttggctgattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgca |
23748488 |
T |
|
| Q |
116 |
agaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaacgtaagggcatgtgtttcttctgatgaagacaa |
202 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||| |
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| T |
23748489 |
agaacttggttggattttaacagttccaacaccttatgtttttcttgttagaaacataagggcatgtaatttatcggatgaagacaa |
23748575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 24116895 - 24116709
Alignment:
| Q |
16 |
atgaacaaagaaaggctgttggtgtttaccacgtcgagtacatggctgattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgca |
115 |
Q |
| |
|
|||||||||||| | |||||||||||| | || || |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |
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| T |
24116895 |
atgaacaaagaagtgtggttggtgtttacgatgttgaatacatggctgattatatttatatgccggaagaaatatgtcaaatggagaagctaatcctaca |
24116796 |
T |
|
| Q |
116 |
agaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaacgtaagggcatgtgtttcttctgatgaagacaa |
202 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| || ||||||||||| |
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| T |
24116795 |
aaaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaacataagggcgtgtcttttatccgatgaagacaa |
24116709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 24614479 - 24614633
Alignment:
| Q |
16 |
atgaacaaagaaaggctgttggtgtttaccacgtcgagtacatggctgattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgca |
115 |
Q |
| |
|
|||||||||||| || ||||| |||||| | || || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
24614479 |
atgaacaaagaagtgcggttggcgtttacgatgttgaatacatggctgattatatttatatgccggaagaaatatgtcaaatggagaagcttatcctaca |
24614578 |
T |
|
| Q |
116 |
agaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaac |
170 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24614579 |
agaacttggttggatattaacggttccaacaccttatgtttttcttgttagaaac |
24614633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 56 - 199
Target Start/End: Complemental strand, 24109148 - 24109005
Alignment:
| Q |
56 |
catggctgattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgcaagaacttggttggattttaacggttccaacaccttatgtt |
155 |
Q |
| |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24109148 |
catggctgattacatttatatgccaaaagaaatatgtcaaatggagaagctaatcctacaagaacttggttggattttaacggttccaacaccttatgtt |
24109049 |
T |
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| Q |
156 |
tttcttgttagaaacgtaagggcatgtgtttcttctgatgaaga |
199 |
Q |
| |
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|||||| |||||||| ||||| |||| ||| ||||||||||| |
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| T |
24109048 |
tttcttattagaaacataaggacatgccttttatctgatgaaga |
24109005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 11390684 - 11390754
Alignment:
| Q |
99 |
gagaagcttatcctgcaagaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaa |
169 |
Q |
| |
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||||||||||| |||||| |||| | ||||| |||||| ||| ||||||||||||| || ||||||||||| |
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|
| T |
11390684 |
gagaagcttatactgcaaaaactggattggaatttaacagttacaacaccttatgtgttccttgttagaaa |
11390754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 11419940 - 11419870
Alignment:
| Q |
99 |
gagaagcttatcctgcaagaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaa |
169 |
Q |
| |
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||||||||||| |||||| |||| | ||||| |||||| ||| ||||||||||||| || ||||||||||| |
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|
| T |
11419940 |
gagaagcttatactgcaaaaactggattggaatttaacagttacaacaccttatgtgttccttgttagaaa |
11419870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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