View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3205_low_4 (Length: 393)
Name: NF3205_low_4
Description: NF3205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3205_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 80 - 379
Target Start/End: Complemental strand, 3771165 - 3770866
Alignment:
| Q |
80 |
tagtgtgtcttttgtcctgctctataaattagcaaacaatccatgccatttgcatcttccattttcaatcaaatggataatcctcactttcttgtcattc |
179 |
Q |
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| T |
3771165 |
tagtgtgtcttttgacctgctctataaattagcaaacaatccatgccatttgcatcttccattttcaatcaaatgggtatccctcactttcttgttattc |
3771066 |
T |
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| Q |
180 |
catacccaatcccaggtcatataaatcctctcatgcaattatgtcatgctttaagaaaacatggctgcaagatcactttccttaacacagaattcagcca |
279 |
Q |
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| T |
3771065 |
catacccaattccaggtcatataaatcccctcatgcaattatgtcatgttttagccaaacatggctgcaagatcactttccttaacacagaattcagcca |
3770966 |
T |
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| Q |
280 |
caaaagaaccaacaacaataatgaacaaagtcaagaaacaataaactttgtcacactcccagatggtttggaacctgaagatgatagaagtgatcaaaag |
379 |
Q |
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| T |
3770965 |
caaaagaaccaacaacaataatgaacaaagtcaagaaacaataaactttgtcacactcccagatggtttggaacctgaagatgatagaagtgatcaaaag |
3770866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 294
Target Start/End: Complemental strand, 3783511 - 3783378
Alignment:
| Q |
161 |
cctcactttcttgtcattccatacccaatcccaggtcatataaatcctctcatgcaattatgtcatgctttaagaaaacatggctgcaagatcactttcc |
260 |
Q |
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| T |
3783511 |
cctcattttcttgttattccatacccaatagcaggtcatgtgaatcctcttatgcaattatctcatcttttatccaaacatggctgcaaaatcacttttc |
3783412 |
T |
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| Q |
261 |
ttaacacagaattcagccacaaaagaaccaacaa |
294 |
Q |
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| T |
3783411 |
tcaacacagaatttagcaacaaaagaaccaacaa |
3783378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 3783340 - 3783262
Alignment:
| Q |
299 |
aatgaacaaagtcaagaaacaataaactttgtcacactcccagatggtttggaacctgaagatgatagaagtgatcaaa |
377 |
Q |
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| T |
3783340 |
aatgaacaaagtcaagaaacaataaactttgttacactcccagatggtttggaagatgaagacaacagaagtgaccaaa |
3783262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Complemental strand, 3791023 - 3790982
Alignment:
| Q |
332 |
acactcccagatggtttggaacctgaagatgatagaagtgat |
373 |
Q |
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| T |
3791023 |
acacttccagatggtttggaacctgaagatgatagaagtgat |
3790982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 3798334 - 3798375
Alignment:
| Q |
332 |
acactcccagatggtttggaacctgaagatgatagaagtgat |
373 |
Q |
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| T |
3798334 |
acactcccagatggtttggaatctgaagatgatagaagtgat |
3798375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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