View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3205_low_9 (Length: 264)

Name: NF3205_low_9
Description: NF3205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3205_low_9
NF3205_low_9
[»] chr5 (41 HSPs)
chr5 (131-262)||(7162014-7162144)
chr5 (133-262)||(43228575-43228703)
chr5 (131-262)||(16567846-16567976)
chr5 (131-262)||(32953598-32953728)
chr5 (131-262)||(1672417-1672547)
chr5 (183-262)||(37607512-37607591)
chr5 (183-262)||(37779719-37779798)
chr5 (131-261)||(15675357-15675498)
chr5 (131-261)||(35468947-35469088)
chr5 (131-261)||(30249009-30249150)
chr5 (131-204)||(15504062-15504134)
chr5 (131-204)||(36234485-36234557)
chr5 (214-261)||(16667506-16667553)
chr5 (131-197)||(6900887-6900952)
chr5 (131-204)||(13942683-13942754)
chr5 (131-204)||(14832741-14832813)
chr5 (131-261)||(33006951-33007071)
chr5 (214-261)||(15503960-15504007)
chr5 (131-204)||(2476478-2476550)
chr5 (131-204)||(34444079-34444151)
chr5 (214-261)||(34846411-34846458)
chr5 (214-264)||(15436035-15436084)
chr5 (214-259)||(767328-767373)
chr5 (131-199)||(767416-767483)
chr5 (222-262)||(12267430-12267470)
chr5 (88-123)||(16668863-16668898)
chr5 (214-257)||(17192682-17192725)
chr5 (222-261)||(21069053-21069092)
chr5 (226-261)||(42989578-42989613)
chr5 (183-217)||(37654865-37654899)
chr5 (131-204)||(12267313-12267384)
chr5 (90-123)||(30248894-30248927)
chr5 (31-89)||(32147299-32147357)
chr5 (214-259)||(34444012-34444057)
chr5 (131-176)||(34846487-34846531)
chr5 (225-262)||(36234606-36234643)
chr5 (131-176)||(37552055-37552099)
chr5 (131-176)||(37654885-37654929)
chr5 (91-123)||(16567721-16567753)
chr5 (91-123)||(34443896-34443928)
chr5 (90-122)||(42989462-42989494)
[»] chr7 (28 HSPs)
chr7 (131-262)||(5991350-5991480)
chr7 (131-262)||(7873150-7873280)
chr7 (131-262)||(22206616-22206746)
chr7 (131-262)||(22227993-22228123)
chr7 (178-262)||(25688166-25688250)
chr7 (183-262)||(30852386-30852465)
chr7 (131-204)||(4843433-4843505)
chr7 (131-262)||(26722889-26723010)
chr7 (214-261)||(41759632-41759679)
chr7 (214-261)||(21688159-21688206)
chr7 (214-261)||(21932803-21932850)
chr7 (214-261)||(28694064-28694111)
chr7 (151-259)||(38991126-38991229)
chr7 (214-261)||(23704493-23704540)
chr7 (214-261)||(42439598-42439645)
chr7 (131-204)||(19377524-19377597)
chr7 (216-261)||(3012354-3012399)
chr7 (131-204)||(21932672-21932744)
chr7 (131-204)||(23704399-23704471)
chr7 (214-258)||(19377442-19377486)
chr7 (214-261)||(4843348-4843395)
chr7 (214-261)||(35300452-35300499)
chr7 (214-261)||(38129017-38129064)
chr7 (131-204)||(35300358-35300430)
chr7 (91-123)||(5991570-5991602)
chr7 (29-90)||(25950835-25950896)
chr7 (91-123)||(35300593-35300625)
chr7 (57-89)||(44547431-44547463)
[»] chr4 (46 HSPs)
chr4 (131-262)||(9003611-9003741)
chr4 (174-262)||(9694143-9694231)
chr4 (183-262)||(14044401-14044480)
chr4 (183-262)||(11827008-11827086)
chr4 (131-260)||(4728604-4728744)
chr4 (183-239)||(32828243-32828299)
chr4 (214-261)||(25237621-25237668)
chr4 (214-261)||(31364180-31364227)
chr4 (215-261)||(41972462-41972508)
chr4 (131-197)||(52373875-52373940)
chr4 (131-204)||(4552299-4552371)
chr4 (131-204)||(10715770-10715842)
chr4 (131-204)||(10929540-10929612)
chr4 (136-260)||(50383934-50384055)
chr4 (131-199)||(50099989-50100056)
chr4 (214-261)||(8901848-8901895)
chr4 (131-204)||(46645717-46645789)
chr4 (131-261)||(10058582-10058702)
chr4 (214-261)||(49745084-49745131)
chr4 (225-259)||(2576218-2576252)
chr4 (143-201)||(43003126-43003183)
chr4 (131-204)||(2017367-2017439)
chr4 (131-196)||(2521828-2521892)
chr4 (131-204)||(32005997-32006069)
chr4 (131-204)||(40969338-40969410)
chr4 (214-261)||(10715700-10715748)
chr4 (214-261)||(10929470-10929518)
chr4 (214-261)||(4552230-4552277)
chr4 (29-89)||(25708650-25708710)
chr4 (214-261)||(31929055-31929102)
chr4 (222-261)||(46645648-46645687)
chr4 (131-204)||(49745169-49745242)
chr4 (131-176)||(11826978-11827022)
chr4 (57-90)||(13498486-13498519)
chr4 (131-176)||(31364256-31364300)
chr4 (57-90)||(33988791-33988824)
chr4 (224-261)||(40969269-40969306)
chr4 (57-89)||(1859149-1859181)
chr4 (91-123)||(2017590-2017622)
chr4 (225-261)||(2521966-2522002)
chr4 (91-123)||(10715585-10715617)
chr4 (91-123)||(10929355-10929387)
chr4 (29-90)||(20455153-20455214)
chr4 (131-175)||(41972372-41972415)
chr4 (91-123)||(50383819-50383851)
chr4 (57-89)||(54676552-54676584)
[»] chr6 (29 HSPs)
chr6 (131-262)||(14938852-14938982)
chr6 (131-262)||(2960728-2960858)
chr6 (131-261)||(10397739-10397863)
chr6 (131-234)||(28614334-28614432)
chr6 (131-261)||(9696100-9696241)
chr6 (131-261)||(2941267-2941408)
chr6 (214-261)||(23663783-23663830)
chr6 (214-261)||(1781046-1781093)
chr6 (214-259)||(15122090-15122135)
chr6 (131-204)||(23663689-23663761)
chr6 (214-261)||(2836224-2836271)
chr6 (214-261)||(9046939-9046986)
chr6 (222-261)||(34249045-34249084)
chr6 (134-204)||(34188912-34188981)
chr6 (131-176)||(339480-339524)
chr6 (131-204)||(15122157-15122229)
chr6 (131-204)||(34248943-34249015)
chr6 (143-199)||(2836109-2836164)
chr6 (214-261)||(339380-339427)
chr6 (214-261)||(15528991-15529038)
chr6 (131-201)||(15529063-15529132)
chr6 (131-176)||(1780973-1781017)
chr6 (57-90)||(5576377-5576410)
chr6 (57-89)||(287414-287446)
chr6 (57-89)||(5457417-5457449)
chr6 (161-201)||(9046874-9046914)
chr6 (57-89)||(9388791-9388823)
chr6 (91-123)||(10397945-10397977)
chr6 (57-89)||(33487838-33487870)
[»] chr8 (20 HSPs)
chr8 (131-262)||(27321792-27321922)
chr8 (183-262)||(38214802-38214881)
chr8 (131-261)||(36406419-36406560)
chr8 (214-261)||(24965077-24965124)
chr8 (214-261)||(13243138-13243185)
chr8 (153-204)||(34282832-34282883)
chr8 (214-261)||(34282921-34282968)
chr8 (214-261)||(28928103-28928151)
chr8 (131-201)||(28928176-28928245)
chr8 (131-204)||(3383949-3384021)
chr8 (214-262)||(31500855-31500903)
chr8 (222-261)||(39431694-39431733)
chr8 (131-197)||(34282790-34282855)
chr8 (57-90)||(33980469-33980502)
chr8 (131-176)||(38214867-38214911)
chr8 (57-90)||(40784895-40784928)
chr8 (57-90)||(44580879-44580912)
chr8 (91-123)||(36406654-36406686)
chr8 (57-89)||(36786472-36786504)
chr8 (91-123)||(38214689-38214721)
[»] chr3 (32 HSPs)
chr3 (183-262)||(53987913-53987992)
chr3 (174-262)||(26278412-26278500)
chr3 (183-262)||(35077273-35077352)
chr3 (183-262)||(9600399-9600478)
chr3 (131-261)||(26370972-26371092)
chr3 (131-261)||(7501006-7501147)
chr3 (214-261)||(33179148-33179195)
chr3 (131-204)||(44047703-44047775)
chr3 (216-261)||(37516692-37516737)
chr3 (131-204)||(41218285-41218357)
chr3 (132-204)||(43700124-43700195)
chr3 (222-261)||(53068292-53068331)
chr3 (214-261)||(53651948-53651995)
chr3 (131-204)||(28311396-28311468)
chr3 (222-259)||(41218403-41218440)
chr3 (161-204)||(12909947-12909990)
chr3 (214-261)||(38239503-38239550)
chr3 (214-261)||(44047634-44047681)
chr3 (131-204)||(14461184-14461256)
chr3 (131-196)||(33179022-33179086)
chr3 (131-176)||(37516768-37516812)
chr3 (151-204)||(53652017-53652070)
chr3 (91-123)||(12909763-12909795)
chr3 (214-262)||(14461114-14461162)
chr3 (57-89)||(23700785-23700817)
chr3 (57-89)||(23719240-23719272)
chr3 (57-89)||(23737696-23737728)
chr3 (91-123)||(25391977-25392009)
chr3 (88-120)||(41218539-41218571)
chr3 (91-123)||(44047520-44047552)
chr3 (91-123)||(44625634-44625666)
chr3 (57-89)||(49127198-49127230)
[»] scaffold0638 (1 HSPs)
scaffold0638 (183-262)||(4154-4233)
[»] chr1 (32 HSPs)
chr1 (131-217)||(4774072-4774157)
chr1 (131-261)||(27460740-27460864)
chr1 (131-261)||(31844571-31844691)
chr1 (131-261)||(14727374-14727515)
chr1 (214-261)||(27584037-27584084)
chr1 (131-261)||(6331730-6331850)
chr1 (133-204)||(4641969-4642039)
chr1 (214-261)||(25011560-25011607)
chr1 (131-204)||(25007577-25007649)
chr1 (131-204)||(37153920-37153992)
chr1 (131-204)||(44305525-44305597)
chr1 (152-204)||(27583963-27584015)
chr1 (227-262)||(4774050-4774085)
chr1 (214-261)||(24646097-24646144)
chr1 (214-261)||(24745456-24745503)
chr1 (214-261)||(48940440-48940487)
chr1 (131-185)||(49898520-49898573)
chr1 (214-255)||(34459159-34459200)
chr1 (91-123)||(14727248-14727280)
chr1 (214-261)||(9527089-9527136)
chr1 (214-261)||(37154014-37154061)
chr1 (214-261)||(44238882-44238929)
chr1 (214-261)||(44305456-44305503)
chr1 (90-123)||(4773936-4773969)
chr1 (90-123)||(25007393-25007426)
chr1 (131-204)||(25011467-25011539)
chr1 (131-176)||(33468901-33468945)
chr1 (90-123)||(37154143-37154176)
chr1 (29-90)||(25509213-25509274)
chr1 (91-123)||(27584166-27584198)
chr1 (91-123)||(44305342-44305374)
chr1 (91-123)||(49898345-49898377)
[»] chr2 (28 HSPs)
chr2 (131-261)||(41114799-41114940)
chr2 (214-261)||(6799909-6799956)
chr2 (214-261)||(18299166-18299213)
chr2 (216-261)||(12000568-12000613)
chr2 (131-204)||(41010626-41010698)
chr2 (131-261)||(13203812-13203953)
chr2 (214-261)||(22572724-22572771)
chr2 (214-261)||(25562980-25563027)
chr2 (223-261)||(17148826-17148864)
chr2 (131-201)||(18299072-18299141)
chr2 (131-204)||(6799815-6799887)
chr2 (131-204)||(29257480-29257552)
chr2 (131-199)||(25563091-25563158)
chr2 (214-261)||(304148-304195)
chr2 (214-261)||(15651252-15651299)
chr2 (222-261)||(29257411-29257450)
chr2 (153-199)||(25563070-25563116)
chr2 (131-204)||(304021-304093)
chr2 (131-199)||(15651359-15651427)
chr2 (131-204)||(17148910-17148982)
chr2 (131-184)||(33909276-33909328)
chr2 (214-261)||(17249363-17249410)
chr2 (29-89)||(25624738-25624798)
chr2 (131-204)||(12000670-12000743)
chr2 (225-259)||(41010522-41010556)
chr2 (131-176)||(2475948-2475992)
chr2 (131-176)||(22572651-22572695)
chr2 (57-89)||(5664643-5664675)
[»] scaffold0618 (2 HSPs)
scaffold0618 (131-204)||(1809-1881)
scaffold0618 (222-261)||(1740-1779)
[»] scaffold0075 (3 HSPs)
scaffold0075 (131-204)||(11637-11709)
scaffold0075 (214-261)||(6955-7002)
scaffold0075 (214-261)||(11568-11615)
[»] scaffold0161 (1 HSPs)
scaffold0161 (29-90)||(3442-3503)
[»] scaffold0025 (1 HSPs)
scaffold0025 (57-89)||(65637-65669)


Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 131 - 262
Target Start/End: Original strand, 7162014 - 7162144
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7162014 ttatcgcaaaatgttacttc-cttcctgcaaataatttcacatttcctgtggataatttcacatttcctgcggaatctgcaggaaatcctaggcaaaatc 7162112  T
Q  231 tgcaggaaatgtgtttcctgcggaatttacat 262  Q
    |||||||||||||||||||| |||||||||||    
T  7162113 tgcaggaaatgtgtttcctgtggaatttacat 7162144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 43228575 - 43228703
Alignment:
Q  133 atcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctg 232  Q
    |||||||||||||||| || ||||||| |||||||||| ||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43228575 atcgcaaaatgttactcct-ttcctgcgaataatttcatatttcttgcagataatttcacatttcctgcggaatctgcaggaaatcctaggcaaaatctg 43228673  T
Q  233 caggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||||||||||||||||    
T  43228674 caggaaatgtgtttcctgcggaatttacat 43228703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 131 - 262
Target Start/End: Complemental strand, 16567976 - 16567846
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    |||||||||||||||||||| |||||||  |||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16567976 ttatcgcaaaatgttacttc-cttcctgggaataatttcacatttcctgcggataatttcacatttcctgcggaatctgcaggaaatcctaggcaaaatc 16567878  T
Q  231 tgcaggaaatgtgtttcctgcggaatttacat 262  Q
    || ||||||||||||||||||| |||||||||    
T  16567877 tgtaggaaatgtgtttcctgcgaaatttacat 16567846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 131 - 262
Target Start/End: Original strand, 32953598 - 32953728
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    |||||||||||||||||||| |||||| | |||||||||||||||| ||  |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32953598 ttatcgcaaaatgttacttc-cttcctacgaataatttcacatttcctgcagataatttcacatttcctgcggaatctgcaggaaatcctaggcaaaatc 32953696  T
Q  231 tgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||||| ||||||||||||    
T  32953697 tgcaggaaatgtgtttcctacggaatttacat 32953728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 131 - 262
Target Start/End: Original strand, 1672417 - 1672547
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    |||||||||||||||||||| |||||||| |||||||||||||||  ||  ||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  1672417 ttatcgcaaaatgttacttc-cttcctgcgaataatttcacattttctgcagataatttcacatttcctatggaatctgtaggaaatcctaggcaaaatc 1672515  T
Q  231 tgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||| |||| ||||||||||||||| |||||    
T  1672516 tgcagaaaatatgtttcctgcggaatgtacat 1672547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 37607591 - 37607512
Alignment:
Q  183 ataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  37607591 ataatttcacatttcctgcggaatctgcaggaaatcctagacaaaatctgcaggaaatgtgtttcatacggaatttacat 37607512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 37779798 - 37779719
Alignment:
Q  183 ataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  37779798 ataatttcacatttcctgcggaatctgcaggaaatcctagacaaaatctgcaggaaatgtgtttcatacggaatttacat 37779719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 131 - 261
Target Start/End: Complemental strand, 15675498 - 15675357
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga-at-------ctgcag----gaaatc 218  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||| ||| |||||||||||||||||| |||| ||       |||| |     |||||    
T  15675498 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttcctgtagataatttcacatttccttcggatatatctttcctgcggaacttaaatc 15675400  T
Q  219 ctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  15675399 cttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 15675357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 131 - 261
Target Start/End: Complemental strand, 35469088 - 35468947
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga-at-------ctgcag----gaaatc 218  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| ||  ||||||||||||||| ||||||| ||       |||| |     |||||    
T  35469088 ttatcgcaaaatgttacttc-cttcctgcgaataatttcacatttcctgcagataatttcacattttctacggatatatctttcctgcggaacctaaatc 35468990  T
Q  219 ctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  35468989 cttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 35468947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 261
Target Start/End: Complemental strand, 30249150 - 30249009
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga---atct-----gcagga----aatc 218  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||  ||  |||||||||||||||||||||||   ||||     || | |    ||||    
T  30249150 ttatcgcaaaacgttgctt-tcttcctgcaaataatttcacattttctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaatc 30249052  T
Q  219 ctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  30249051 cttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 30249009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 15504134 - 15504062
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| ||  |||||||||||||||||| ||||    
T  15504134 ttatcgcaaaatgttacttc-cttcctgcgaataatttcacatttcctgcagataatttcacatttcctgcgga 15504062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 36234485 - 36234557
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||||||  |||||||||||||||||| ||||    
T  36234485 ttatcgcaaaatgttacttc-cttcttgcgaataatttcacatttcttgcagataatttcacatttcctgcgga 36234557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 16667506 - 16667553
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16667506 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 16667553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 6900952 - 6900887
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttc 197  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||| || |||||||||||||||||    
T  6900952 ttatcgcaaaatgttacttc-cttcatgcgaataatttcacatttcctgcggataatttcacatttc 6900887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 13942683 - 13942754
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||| ||||    
T  13942683 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttcctgtggataa-ttcacatttcctgcgga 13942754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 14832741 - 14832813
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    |||||||||||  ||||||| |||||||| |||||||||||||||| ||  |||||||||||||||||||||||    
T  14832741 ttatcgcaaaacattacttc-cttcctgcgaataatttcacatttcctgcagataatttcacatttcctacgga 14832813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 261
Target Start/End: Complemental strand, 33007071 - 33006951
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||| |  ||||| | ||   |||||| ||||| ||     ||||||| |||||||||    
T  33007071 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttcctacggata-tatc---tttcctgcggaacct-----aaatccttggcaaaatc 33006982  T
Q  231 tgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||||||||||||||| |||||||||||    
T  33006981 tgcaggaaatgtgtttcctacggaatttaca 33006951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 15504007 - 15503960
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||    
T  15504007 aaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttaca 15503960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 2476550 - 2476478
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| |||||| | |||||||||||||||| ||  ||||| |||||||||||||||||    
T  2476550 ttatcgcaaaacgttacttc-cttcctacgaataatttcacatttcctgcagataaattcacatttcctacgga 2476478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 34444151 - 34444079
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| |||||| | |||||||||||||||| ||  ||||| |||||||||||||||||    
T  34444151 ttatcgcaaaacgttacttc-cttcctacgaataatttcacatttcctgcagataaattcacatttcctacgga 34444079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 34846458 - 34846411
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  34846458 aaatccttggcaaaatctgtaggaaatgtgtttactgcggaatttaca 34846411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 15436084 - 15436035
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacatta 264  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| |||||    
T  15436084 aaatcctaggcaaaatccgcaggaaat-tgtttcctgcggaattttcatta 15436035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 767373 - 767328
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaattta 259  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  767373 aaatccttggcaaaacctgtaggaaatgtgtttcctgcggaattta 767328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 767483 - 767416
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcct 199  Q
    |||| |||||| ||||||| ||||||||| ||||||||| |||||  || |||||||||||||||||||    
T  767483 ttattgcaaaacgttactt-tcttcctgcgaataatttctcattttctgcggataatttcacatttcct 767416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 12267430 - 12267470
Alignment:
Q  222 ggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  12267430 ggcaaaatctacaggaaatgtgtttcttgcggaatttacat 12267470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 16668898 - 16668863
Alignment:
Q  88 ggtcaggggcggagccacccccaagctagcctgggc 123  Q
    |||||||||||||||||||||| |||||||||||||    
T  16668898 ggtcaggggcggagccaccccctagctagcctgggc 16668863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 17192682 - 17192725
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatt 257  Q
    ||||||| | ||||||||||||||||||| ||||||||||||||    
T  17192682 aaatccttgacaaaatctgcaggaaatgtatttcctgcggaatt 17192725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 261
Target Start/End: Complemental strand, 21069092 - 21069053
Alignment:
Q  222 ggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  21069092 ggcaaaatctgcaggaaatgtgtttcttgcggaatataca 21069053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 261
Target Start/End: Complemental strand, 42989613 - 42989578
Alignment:
Q  226 aaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||| ||||||||||||||||||||||||||||||    
T  42989613 aaatccgcaggaaatgtgtttcctgcggaatttaca 42989578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 37654899 - 37654865
Alignment:
Q  183 ataatttcacatttcctacggaatctgcaggaaat 217  Q
    ||||||||||||||||| |||||||||||||||||    
T  37654899 ataatttcacatttcctgcggaatctgcaggaaat 37654865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 12267313 - 12267384
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| |||||||  |||||||||||||||  || |||||| |||||||||||| ||||    
T  12267313 ttatcgcaaaacgttacttc-cttcctgtgaataatttcacattttctgcggataa-ttcacatttcctgcgga 12267384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 30248894 - 30248927
Alignment:
Q  90 tcaggggcggagccacccccaagctagcctgggc 123  Q
    |||||||||||||||||||| |||||||||||||    
T  30248894 tcaggggcggagccaccccccagctagcctgggc 30248927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 32147357 - 32147299
Alignment:
Q  31 gggtcttataaaaatggacnnnnnnnttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||||||| ||||       |||||||||| ||||||||||||||||||||||    
T  32147357 gggtcttataaaaagggacaaaaaaattctcaaaaaggtcttataattagggacggagg 32147299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 34444057 - 34444012
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaattta 259  Q
    ||||||| ||||||||||||||||||||  |||| |||||||||||    
T  34444057 aaatccttggcaaaatctgcaggaaatgcatttcttgcggaattta 34444012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 34846531 - 34846487
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttc 176  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||||    
T  34846531 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttc 34846487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 36234606 - 36234643
Alignment:
Q  225 aaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  36234606 aaaatctgcaggaaatgcgtttcctgctgaatttacat 36234643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 37552099 - 37552055
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttc 176  Q
    |||| ||||||||||||||| |||||||| ||||||||||||||||    
T  37552099 ttattgcaaaatgttacttc-cttcctgcgaataatttcacatttc 37552055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 37654929 - 37654885
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttc 176  Q
    |||| ||||||||||||||| |||||||| ||||||||||||||||    
T  37654929 ttattgcaaaatgttacttc-cttcctgcgaataatttcacatttc 37654885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 16567721 - 16567753
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  16567721 caggggcggagccaccccccagctagcctgggc 16567753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 34443896 - 34443928
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  34443896 caggggcggagccaccccccagctagcctgggc 34443928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 42989462 - 42989494
Alignment:
Q  90 tcaggggcggagccacccccaagctagcctggg 122  Q
    |||||||||||||||||||| ||||||||||||    
T  42989462 tcaggggcggagccaccccccagctagcctggg 42989494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 131 - 262
Target Start/End: Original strand, 5991350 - 5991480
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    |||||||||||||||||||| |||||||| |||||||| |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  5991350 ttatcgcaaaatgttacttc-cttcctgcgaataattttacatttcttgcggataatttcacatttcctgcagaatctgcaggaaatcctaggcaaaatc 5991448  T
Q  231 tgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||||||||||||||||||    
T  5991449 tgcaggaaatgtgtttcctgcggaatttacat 5991480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 131 - 262
Target Start/End: Original strand, 7873150 - 7873280
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    |||||||||||||||||||| ||||| || |||||||||||||||| || ||||||||||||||||| |  |||||||||||||||||||||||||||||    
T  7873150 ttatcgcaaaatgttacttc-cttcccgctaataatttcacatttcctgcggataatttcacatttcatgtggaatctgcaggaaatcctaggcaaaatc 7873248  T
Q  231 tgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||||||||||||||||||    
T  7873249 tgcaggaaatgtgtttcctgcggaatttacat 7873280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 131 - 262
Target Start/End: Original strand, 22206616 - 22206746
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||| | ||||||    
T  22206616 ttatcgcaaaatgttacttc-cttcctgcgaataatttcacatttcctgcggataatctcacatttcctgcggaatctgcaggaaatcctaagtaaaatc 22206714  T
Q  231 tgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||||||||||||||||||    
T  22206715 tgcaggaaatgtgtttcctgcggaatttacat 22206746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 131 - 262
Target Start/End: Complemental strand, 22228123 - 22227993
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||| | ||||||    
T  22228123 ttatcgcaaaatgttacttc-cttcctgcgaataatttcacatttcctgcggataatctcacatttcctgcggaatctgcaggaaatcctaagtaaaatc 22228025  T
Q  231 tgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||||||||||||||||||    
T  22228024 tgcaggaaatgtgtttcctgcggaatttacat 22227993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 25688166 - 25688250
Alignment:
Q  178 tgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25688166 tgtgaataatttcacatttcctgcggaatctgcaggaaatcctaggcaaaatctgcaggaaatatgtttcctgcggaatttacat 25688250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 30852465 - 30852386
Alignment:
Q  183 ataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30852465 ataatttcacatttcctgcggaatctgcaggaaatcctaggcaaaatctgaaggaaatgtgtttcctgcggaatttacat 30852386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 4843505 - 4843433
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||||| || ||||||||||||||||||| ||||    
T  4843505 ttatcgcaaaacgttacttct-ttcctgcgaataatttcacatttcctgcggataatttcacatttcctgcgga 4843433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 262
Target Start/End: Original strand, 26722889 - 26723010
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||||||  ||||| | ||   |||||| ||||| ||     ||||||| | |||||||    
T  26722889 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttcttacggata-tatc---tttcctgcggaacct-----aaatccttgacaaaatc 26722978  T
Q  231 tgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||||||||||||||||||    
T  26722979 tgcaggaaatgtgtttcctgcggaatttacat 26723010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 41759632 - 41759679
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41759632 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 41759679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 21688206 - 21688159
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||    
T  21688206 aaatccttcgcaaaatctgcaggaaatgtgtttcctgcggaatttaca 21688159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 21932803 - 21932850
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  21932803 aaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatttaca 21932850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 28694064 - 28694111
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||    
T  28694064 aaatcctgggcaaaatctgcaggaaatgtgtttcctgcagaatttaca 28694111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 38991126 - 38991229
Alignment:
Q  151 tcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctg 250  Q
    ||||||||| |||||||||| ||||| |  | |||||||||||||| || ||||  ||     ||||||| |||||||||||||||||||||||||||      
T  38991126 tcttcctgcgaataatttcatatttcctacgaataatttcacattttctgcggatcct-----aaatccttggcaaaatctgcaggaaatgtgtttccaa 38991220  T
Q  251 cggaattta 259  Q
    |||||||||    
T  38991221 cggaattta 38991229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 23704493 - 23704540
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||||||| | ||||||||||||    
T  23704493 aaatccttggcaaaatctgcaggaaatgtgttttcggcggaatttaca 23704540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 42439598 - 42439645
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  42439598 aaatccttggcaaaatctgcagaaaatgtgtttcctgcgaaatttaca 42439645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 19377597 - 19377524
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacattt-cttgtggataatttcacatttcctacgga 204  Q
    ||||||||||||||||  ||| ||||||| ||||||||||||||| | || ||||||||||||||||||| ||||    
T  19377597 ttatcgcaaaatgttatgtct-ttcctgcgaataatttcacattttcctgcggataatttcacatttcctgcgga 19377524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 3012399 - 3012354
Alignment:
Q  216 atcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||| ||||||||||||||||| ||||||||||||||||| ||||    
T  3012399 atccttggcaaaatctgcaggaagtgtgtttcctgcggaatgtaca 3012354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 21932672 - 21932744
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||| ||  |||||||| | ||||||| ||||    
T  21932672 ttatcgcaaaatgttacttct-ttcctgcgaataatttcatatttcctgcagataattttatatttcctgcgga 21932744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 23704399 - 23704471
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    |||||| |||| ||||||||| ||| ||| |||||||| ||||||| ||  |||||||||||||||||||||||    
T  23704399 ttatcgtaaaacgttacttct-ttcttgcgaataattttacatttcctgcagataatttcacatttcctacgga 23704471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 19377486 - 19377442
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaattt 258  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||    
T  19377486 aaatccttggcaaaatctgcaggaaatgtatttccttcggaattt 19377442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 4843395 - 4843348
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||| |||||||||||| |||||||| ||||    
T  4843395 aaatccttggcaaaatctgcatgaaatgtgtttcatgcggaatgtaca 4843348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 35300452 - 35300499
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||||||||   ||||||||||||||||||    
T  35300452 aaatccttggcaaaatctgcaggaaatacatttcctgcggaatttaca 35300499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 38129017 - 38129064
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||| ||||||||||||||||||| | |||||||||    
T  38129017 aaatccttggcaaaatatgcaggaaatgtgtttccttcagaatttaca 38129064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 35300358 - 35300430
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    |||||| |||| |||||||| |||| | | |||||||||||||||| ||  ||||| |||||||||||||||||    
T  35300358 ttatcgtaaaacgttacttc-cttcttacgaataatttcacatttcctgcagataaattcacatttcctacgga 35300430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 5991602 - 5991570
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  5991602 caggggcggagccaccccccagctagcctgggc 5991570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 25950896 - 25950835
Alignment:
Q  29 aggggtcttataaaaatggacnnnnnnnttctcaaaaacgtcttataattagggacggaggt 90  Q
    |||||||||||||||| ||||       |||||||||| |||||||||||| ||||||||||    
T  25950896 aggggtcttataaaaagggacaaaaaaattctcaaaaaggtcttataattaaggacggaggt 25950835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 35300625 - 35300593
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  35300625 caggggcggagccaccccccagctagcctgggc 35300593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 44547463 - 44547431
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||| ||||||||||||||||||||||    
T  44547463 ttctcaaaaaggtcttataattagggacggagg 44547431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 131 - 262
Target Start/End: Complemental strand, 9003741 - 9003611
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9003741 ttatcgcaaaatgttacttc-cttcttgcgaataatttcacatttcctatggataatttcacatttcctgcggaatctgcaggaaatcctaggcaaaatc 9003643  T
Q  231 tgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||||||||||||||||||    
T  9003642 tgcaggaaatgtgtttcctgcggaatttacat 9003611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 9694231 - 9694143
Alignment:
Q  174 ttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    |||||| | ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9694231 ttcttgcgaataatttgacatttcctgcggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 9694143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 14044480 - 14044401
Alignment:
Q  183 ataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14044480 ataatttcacatttcctgcggaatatgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 14044401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 11827008 - 11827086
Alignment:
Q  183 ataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||| |||||||||    
T  11827008 ataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctacaggaaatgtattt-ctgcgaaatttacat 11827086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 260
Target Start/End: Complemental strand, 4728744 - 4728604
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga---atct-----gcagga----aatc 218  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||  ||  |||||||||||||||||||| ||   ||||     || | |    ||||    
T  4728744 ttatcgcaaaacgttacttc-cttcctgcaaataatttcacattttctgcagataatttcacatttcctacagatatatctttcctgcggaacctaaatc 4728646  T
Q  219 ctaggcaaaatctgcaggaaatgtgtttcctgcggaatttac 260  Q
    || |||||||||||||||||||||||||||||||||||||||    
T  4728645 cttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 4728604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 32828299 - 32828243
Alignment:
Q  183 ataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctgcaggaaa 239  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  32828299 ataattttacatttcctgcggaatctgcaggaaatcctaggcaaaatatgcaggaaa 32828243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 25237668 - 25237621
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25237668 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 25237621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 31364227 - 31364180
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31364227 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 31364180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 41972462 - 41972508
Alignment:
Q  215 aatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  41972462 aatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 41972508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 52373940 - 52373875
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttc 197  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||| || |||||||||||||||||    
T  52373940 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttcctgcggataatttcacatttc 52373875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 4552371 - 4552299
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| |||||| |||||||||||||||||| ||  ||||| |||||||||||||||||    
T  4552371 ttatcgcaaaacgttacttc-cttcctacaaataatttcacatttcctgcagataaattcacatttcctacgga 4552299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 10715842 - 10715770
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    |||||||||||  ||||||| |||||||| |||||||||||||||| ||  |||||||||||||||||||||||    
T  10715842 ttatcgcaaaacattacttc-cttcctgcgaataatttcacatttcctgcagataatttcacatttcctacgga 10715770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 10929612 - 10929540
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    |||||||||||  ||||||| |||||||| |||||||||||||||| ||  |||||||||||||||||||||||    
T  10929612 ttatcgcaaaacattacttc-cttcctgcgaataatttcacatttcctgcagataatttcacatttcctacgga 10929540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 260
Target Start/End: Complemental strand, 50384055 - 50383934
Alignment:
Q  136 gcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctgcag 235  Q
    |||||| |||||||| |||||||| |||||||| | | ||| || |||| |||||||||||||||||||  ||  |  | ||||| ||||||||||||||    
T  50384055 gcaaaacgttacttc-cttcctgcgaataattttataattcctgcggattatttcacatttcctacggatcctaaa--atatccttggcaaaatctgcag 50383959  T
Q  236 gaaatgtgtttcctgcggaatttac 260  Q
    ||||||||||||||||  |||||||    
T  50383958 gaaatgtgtttcctgcaaaatttac 50383934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 50100056 - 50099989
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcct 199  Q
    ||||||||||| |||||||| |||||| | |||||||||||||||| || |||||||||||||||||||    
T  50100056 ttatcgcaaaacgttacttc-cttcctacgaataatttcacatttcctgcggataatttcacatttcct 50099989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 8901895 - 8901848
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  8901895 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggagtttaca 8901848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 46645789 - 46645717
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||| |||  ||||||||| |||| |||||||    
T  46645789 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttcctgtatataatttcatattttctacgga 46645717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 261
Target Start/End: Complemental strand, 10058702 - 10058582
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||| |  ||||| | ||   |||||| ||||| ||     ||||||| || ||||||    
T  10058702 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttcctacggata-tatc---tttcctgcggaacct-----aaatccttggtaaaatc 10058613  T
Q  231 tgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||| |||||||||||||||||||||||||||    
T  10058612 tgctggaaatgtgtttcctgcggaatttaca 10058582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 49745131 - 49745084
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  49745131 aaatccttggcaaaatctgcagaaaatgtgtttcctacggaatttaca 49745084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 225 - 259
Target Start/End: Complemental strand, 2576252 - 2576218
Alignment:
Q  225 aaaatctgcaggaaatgtgtttcctgcggaattta 259  Q
    |||||||||||||||||||||||||||||||||||    
T  2576252 aaaatctgcaggaaatgtgtttcctgcggaattta 2576218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 43003126 - 43003183
Alignment:
Q  143 gttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctac 201  Q
    ||||||||| ||||||| |||||||||||||||| ||  ||||||||||||||||||||    
T  43003126 gttacttct-ttcctgcgaataatttcacatttcctgcagataatttcacatttcctac 43003183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 2017367 - 2017439
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| |||||| | |||||||||||||||| |   ||||| |||||||||||||||||    
T  2017367 ttatcgcaaaacgttacttc-cttcctacgaataatttcacatttcctacagataaattcacatttcctacgga 2017439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 2521828 - 2521892
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacattt 196  Q
    |||||| |||| |||||||| |||||||| |||||||||||||||| || ||||||| ||||||||    
T  2521828 ttatcgtaaaacgttacttc-cttcctgcgaataatttcacatttcctgcggataatatcacattt 2521892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 32006069 - 32005997
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| |||||| | |||||||||||||||| ||   |||| |||||||||||||||||    
T  32006069 ttatcgcaaaacgttacttc-cttcctacgaataatttcacatttcctgcaaataaattcacatttcctacgga 32005997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 40969410 - 40969338
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| ||| |||| |||||||||| ||||  ||  |||||||||||||||||||||||    
T  40969410 ttatcgcaaaacgttacttc-ctttctgcgaataatttcatattttctgcagataatttcacatttcctacgga 40969338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 10715748 - 10715700
Alignment:
Q  214 aaatcctaggcaaaatctgcagga-aatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  10715748 aaatccttggcaaaatctgcagggcaatgtgtttcctgcggaatttaca 10715700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 10929518 - 10929470
Alignment:
Q  214 aaatcctaggcaaaatctgcagga-aatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  10929518 aaatccttggcaaaatctgcagggcaatgtgtttcctgcggaatttaca 10929470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 4552277 - 4552230
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||||||||   ||||||||||||||||||    
T  4552277 aaatccttggcaaaatctgcaggaaatacatttcctgcggaatttaca 4552230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 25708650 - 25708710
Alignment:
Q  29 aggggtcttataaaaatggacnnnnnnnttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||||||||| ||||       |||||||||| ||||||||||||||||||||||    
T  25708650 aggggtcttataaaaagggacaaaaaaattctcaaaaaggtcttataattagggacggagg 25708710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 31929055 - 31929102
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||| ||||||||||||||||| ||| |||||||||    
T  31929055 aaatccttggcaaaatttgcaggaaatgtgtttcttgcagaatttaca 31929102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 261
Target Start/End: Complemental strand, 46645687 - 46645648
Alignment:
Q  222 ggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  46645687 ggcaaaatctgcatgaaatgtgtttcctgcagaatttaca 46645648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 49745242 - 49745169
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttct-tgtggataatttcacatttcctacgga 204  Q
    |||||| |||||||||| || |||||||| |||||||| |||||| | || ||||||||||||||||||| ||||    
T  49745242 ttatcgtaaaatgttacgtc-cttcctgcgaataattttacatttttctgcggataatttcacatttcctgcgga 49745169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 11826978 - 11827022
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttc 176  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||||    
T  11826978 ttatcgtaaaatgttacttc-cttcctgcgaataatttcacatttc 11827022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 13498486 - 13498519
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggaggt 90  Q
    ||||||||||| ||||||||||||||||||||||    
T  13498486 ttctcaaaaacatcttataattagggacggaggt 13498519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 31364300 - 31364256
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttc 176  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||||    
T  31364300 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttc 31364256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 33988791 - 33988824
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggaggt 90  Q
    |||| |||||||||||||||||||||||||||||    
T  33988791 ttcttaaaaacgtcttataattagggacggaggt 33988824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 40969306 - 40969269
Alignment:
Q  224 caaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  40969306 caaaatctgcagaaaatgtgtttcctgcagaatttaca 40969269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 1859181 - 1859149
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||| ||||||||||||||||||||||    
T  1859181 ttctcaaaaaggtcttataattagggacggagg 1859149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 2017622 - 2017590
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  2017622 caggggcggagccaccccccagctagcctgggc 2017590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 2521966 - 2522002
Alignment:
Q  225 aaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  2521966 aaaatctacaggaaatgtgtttcctgcggactttaca 2522002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 10715585 - 10715617
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  10715585 caggggcggagccaccccccagctagcctgggc 10715617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 10929355 - 10929387
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  10929355 caggggcggagccaccccccagctagcctgggc 10929387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 20455153 - 20455214
Alignment:
Q  29 aggggtcttataaaaatggacnnnnnnnttctcaaaaacgtcttataattagggacggaggt 90  Q
    |||||||||||||||| ||||       |||||||||  |||||||||||||||||||||||    
T  20455153 aggggtcttataaaaagggacaaaaaaattctcaaaagggtcttataattagggacggaggt 20455214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 41972372 - 41972415
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacattt 175  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||    
T  41972372 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacattt 41972415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 50383819 - 50383851
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  50383819 caggggcggagccaccccccagctagcctgggc 50383851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 54676584 - 54676552
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||| ||||||||||||||||||||||    
T  54676584 ttctcaaaaaggtcttataattagggacggagg 54676552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 131 - 262
Target Start/End: Original strand, 14938852 - 14938982
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||| ||  |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  14938852 ttatcgcaaaatgttactt-tcttcctgggaataatttcacatttcctgcagataatttcacatttcctacagaatctgcaggaaatcctaagcaaaatc 14938950  T
Q  231 tgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||||||||||||||||||    
T  14938951 tgcaggaaatgtgtttcctgcggaatttacat 14938982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 131 - 262
Target Start/End: Complemental strand, 2960858 - 2960728
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    |||| ||||||||||||||| |||| ||| |||||||||||||||| || |||||||||||||||| ||| ||||||||||||||||||| ||||||||     
T  2960858 ttattgcaaaatgttacttc-cttcttgcgaataatttcacatttcctgcggataatttcacattttctagggaatctgcaggaaatcctgggcaaaatt 2960760  T
Q  231 tgcaggaaatgtgtttcctgcggaatttacat 262  Q
     ||||||||||||||| ||||| |||||||||    
T  2960759 agcaggaaatgtgttttctgcgaaatttacat 2960728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 261
Target Start/End: Original strand, 10397739 - 10397863
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||||     |||||||||||||||||||||||| ||     ||||||| ||||||||     
T  10397739 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttccaacagataatttcacatttcctacggaacct-----aaatccttggcaaaata 10397832  T
Q  231 tgcaggaaatgtgtttcctgcggaatttaca 261  Q
    |||||||||||||||||||||||||||||||    
T  10397833 tgcaggaaatgtgtttcctgcggaatttaca 10397863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 28614334 - 28614432
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    |||||||||||||||||||| |||||||| |||||||||||||||  ||  |||||||||||||||||||||||||    |||||||||| |||||||||    
T  28614334 ttatcgcaaaatgttacttc-cttcctgcgaataatttcacattttctgctgataatttcacatttcctacggaat----aggaaatcctgggcaaaatc 28614428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 261
Target Start/End: Complemental strand, 9696241 - 9696100
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga-at-------ctgcag----gaaatc 218  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||| ||  ||||||||||||||||||||||| ||       |||| |     |||||    
T  9696241 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttcctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaatc 9696143  T
Q  219 ctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    || ||||||||||||||||||| ||||||||||||||||||||    
T  9696142 cttggcaaaatctgcaggaaatatgtttcctgcggaatttaca 9696100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 261
Target Start/End: Complemental strand, 2941408 - 2941267
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga---atc-----tgcag----gaaatc 218  Q
    ||||||||||| |||||||| |||||| | |||||||||||||||| ||  |||||||||||||||||||||||   |||     ||| |     |||||    
T  2941408 ttatcgcaaaacgttacttc-cttcctacgaataatttcacatttcctgcagataatttcacatttcctacggatatatctttcatgcggaacctaaatc 2941310  T
Q  219 ctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    || ||||||||||||||||||||||||||||||| ||||||||    
T  2941309 cttggcaaaatctgcaggaaatgtgtttcctgcgaaatttaca 2941267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 23663783 - 23663830
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23663783 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 23663830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 1781046 - 1781093
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  1781046 aaatccttggcaaaatctgcaggaaatgtgtttcctgaggaatttaca 1781093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 15122135 - 15122090
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaattta 259  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||    
T  15122135 aaatccttggcaaaatctgcaggaaatgtgtttcctgcagaattta 15122090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 23663689 - 23663761
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| ||||||||  ||||||| |||||||||||||||| ||  ||||||||||||||| |||||||    
T  23663689 ttatcgcaaaacgttacttca-ttcctgcgaataatttcacatttcctgcagataatttcacattttctacgga 23663761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 2836224 - 2836271
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| | ||||||||||||||||||| ||||||||||||||||||    
T  2836224 aaatccttgacaaaatctgcaggaaatgtatttcctgcggaatttaca 2836271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 9046939 - 9046986
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| | ||||||||||||||||||||||||||||||||| ||||    
T  9046939 aaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatctaca 9046986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 261
Target Start/End: Original strand, 34249045 - 34249084
Alignment:
Q  222 ggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  34249045 ggcaaaatctgcaggaaatgtgtttcctgcagaatttaca 34249084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 34188981 - 34188912
Alignment:
Q  134 tcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    |||||||| ||||| ||||| | ||| |||||||||||||||| || ||||||||||||||||||| ||||    
T  34188981 tcgcaaaacgttacctctct-cttgcgaataatttcacatttcctgcggataatttcacatttcctgcgga 34188912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 339524 - 339480
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttc 176  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||    
T  339524 ttatcgcaaaatgttacttc-cttcctgcaattaatttcacatttc 339480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 15122229 - 15122157
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| ||||||| |||| |||| |||||||||||||||  ||  |||||||| ||||||||||||||    
T  15122229 ttatcgcaaaacgttactt-tctttctgcgaataatttcacattttctgcagataattttacatttcctacgga 15122157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 34248943 - 34249015
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| ||||||||  ||||||||||||||| ||  |||||||||| |||| |||||||    
T  34248943 ttatcgcaaaacgttacttc-cttcctgcggataatttcacatttcctgcagataatttcatattttctacgga 34249015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 2836109 - 2836164
Alignment:
Q  143 gttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcct 199  Q
    |||||||| |||||||| |||||||||||||||| ||  ||||||||||||||||||    
T  2836109 gttacttc-cttcctgcgaataatttcacatttcctgcagataatttcacatttcct 2836164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 339427 - 339380
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| || |||||||||||||||||| |||||| |||||||||||    
T  339427 aaatccttggtaaaatctgcaggaaatgtatttcctacggaatttaca 339380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 15529038 - 15528991
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||||||||   ||||||||||||||||||    
T  15529038 aaatccttggcaaaatctgcaggaaatacatttcctgcggaatttaca 15528991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 15529132 - 15529063
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctac 201  Q
    |||||||||||  |||||||| ||||| | |||||||||||||||| ||  ||||| ||||||||||||||    
T  15529132 ttatcgcaaaacattacttct-ttcctacgaataatttcacatttcctgcagataaattcacatttcctac 15529063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 1780973 - 1781017
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttc 176  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||||    
T  1780973 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttc 1781017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 5576377 - 5576410
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggaggt 90  Q
    ||||||||||||||||||||||| ||||||||||    
T  5576377 ttctcaaaaacgtcttataattaaggacggaggt 5576410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 287414 - 287446
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||| ||||||||||||||||||||||    
T  287414 ttctcaaaaaggtcttataattagggacggagg 287446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 5457449 - 5457417
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||| ||||||||||||||||||||||    
T  5457449 ttctcaaaaaggtcttataattagggacggagg 5457417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 9046874 - 9046914
Alignment:
Q  161 aataatttcacatttcttgtggataatttcacatttcctac 201  Q
    |||||||||||||||| ||  ||||||||||||||||||||    
T  9046874 aataatttcacatttcctgcagataatttcacatttcctac 9046914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 9388791 - 9388823
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||| ||||||||||||||||||||||    
T  9388791 ttctcaaaaaggtcttataattagggacggagg 9388823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 10397977 - 10397945
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  10397977 caggggcggagccaccccccagctagcctgggc 10397945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 33487870 - 33487838
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||| ||||||||||||||||||||||    
T  33487870 ttctcaaaaaggtcttataattagggacggagg 33487838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 131 - 262
Target Start/End: Original strand, 27321792 - 27321922
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    |||||||||||||||||||| |||||||| |||||||||||||||  ||  ||||||||||||| |||| | ||||||||||||||| |||||||||||     
T  27321792 ttatcgcaaaatgttacttc-cttcctgcgaataatttcacattttctgcagataatttcacatatcctgcagaatctgcaggaaattctaggcaaaatt 27321890  T
Q  231 tgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||||||||||||||||||    
T  27321891 tgcaggaaatgtgtttcctgcggaatttacat 27321922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 38214881 - 38214802
Alignment:
Q  183 ataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||  ||| ||||||||||    
T  38214881 ataatttcacatttcctgcggaatttgcaggaaatcctagacaaaatctgcaggaaatgtgttttatgcagaatttacat 38214802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 131 - 261
Target Start/End: Original strand, 36406419 - 36406560
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga-at-------ctgcagga----aatc 218  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||||||  ||||||||||||||||||||||| ||       |||| | |    ||||    
T  36406419 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttcttgcagataatttcacatttcctacggatatatctttcctgcggaacctcaatc 36406517  T
Q  219 ctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    || |||||||||||||||||||||||||||| |||||||||||    
T  36406518 cttggcaaaatctgcaggaaatgtgtttcctacggaatttaca 36406560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 24965124 - 24965077
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24965124 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 24965077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 13243185 - 13243138
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||    
T  13243185 aaatccttggcaaaatctacaggaaatgtgtttcctgcggaatttaca 13243138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 34282832 - 34282883
Alignment:
Q  153 ttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    |||||||||||||||||||||||| || ||||||||||||||||||| ||||    
T  34282832 ttcctgcaaataatttcacatttcatgcggataatttcacatttcctgcgga 34282883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 34282921 - 34282968
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||    
T  34282921 aaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttaca 34282968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 28928151 - 28928103
Alignment:
Q  214 aaatcctaggcaaaatctgcagg-aaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  28928151 aaatccttggcaaaatctgcagggaaatgtgtttcctgcggaatttaca 28928103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 28928245 - 28928176
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctac 201  Q
    |||||| |||| |||||||| |||||||| |||||||||||||||  ||  ||||||||||||||||||||    
T  28928245 ttatcgtaaaaagttacttc-cttcctgcgaataatttcacattttctgcagataatttcacatttcctac 28928176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 3383949 - 3384021
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| |||||| | ||||||||||| |||| ||  ||||| |||||||||||||||||    
T  3383949 ttatcgcaaaacgttacttc-cttcctacgaataatttcacgtttcctgcagataaattcacatttcctacgga 3384021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 31500855 - 31500903
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||| ||||||||| | |||||||||||||||||| ||||||||||    
T  31500855 aaatccttggcaaaatccgtaggaaatgtgtttcctgcagaatttacat 31500903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 261
Target Start/End: Original strand, 39431694 - 39431733
Alignment:
Q  222 ggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  39431694 ggcaaaatctgcacgaaatgtgtttcctacggaatttaca 39431733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 34282790 - 34282855
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttc 197  Q
    |||||||| || |||||||| |||||||| |||||||||||||||| ||   |||||||||||||||    
T  34282790 ttatcgcacaacgttacttc-cttcctgcgaataatttcacatttcctgcaaataatttcacatttc 34282855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 33980502 - 33980469
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggaggt 90  Q
    |||||||||| |||||||||||||||||||||||    
T  33980502 ttctcaaaaaagtcttataattagggacggaggt 33980469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 38214911 - 38214867
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttc 176  Q
    ||||||||||||||||||||  ||||||| ||||||||||||||||    
T  38214911 ttatcgcaaaatgttacttca-ttcctgcgaataatttcacatttc 38214867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 40784928 - 40784895
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggaggt 90  Q
    |||||||||| |||||||||||||||||||||||    
T  40784928 ttctcaaaaaggtcttataattagggacggaggt 40784895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 44580879 - 44580912
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggaggt 90  Q
    |||||||||| |||||||||||||||||||||||    
T  44580879 ttctcaaaaaggtcttataattagggacggaggt 44580912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 36406686 - 36406654
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  36406686 caggggcggagccaccccccagctagcctgggc 36406654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 36786504 - 36786472
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||| ||||||||||||||||||||||    
T  36786504 ttctcaaaaaggtcttataattagggacggagg 36786472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 38214689 - 38214721
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  38214689 caggggcggagccaccccccagctagcctgggc 38214721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 53987992 - 53987913
Alignment:
Q  183 ataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53987992 ataatttcacatttcctgcggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 53987913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 26278500 - 26278412
Alignment:
Q  174 ttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    |||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26278500 ttcttgcgaataatttcacatttcctacgaaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctccggaatttacat 26278412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 35077352 - 35077273
Alignment:
Q  183 ataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    |||||||||||||| || |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35077352 ataatttcacattttctgcaaaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 35077273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 9600478 - 9600399
Alignment:
Q  183 ataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  9600478 ataatttcatatttcctgcggaatcggcaggaaatcctaagcaaaatctgcaggaaatgtgtttcctgcagaatttacat 9600399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 261
Target Start/End: Original strand, 26370972 - 26371092
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||| |  ||||| | ||   |||||| ||||| ||     ||||||| |||||||||    
T  26370972 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttcctacggata-tatc---tttcctgcggaacct-----aaatccttggcaaaatc 26371061  T
Q  231 tgcaggaaatgtgtttcctgcggaatttaca 261  Q
    |||||||||||||||||||||||||||||||    
T  26371062 tgcaggaaatgtgtttcctgcggaatttaca 26371092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 261
Target Start/End: Complemental strand, 7501147 - 7501006
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga-at-------ctgcag----gaaatc 218  Q
    ||||||||||| |||||||  |||||||| |||||||||||||||| ||  ||||||||||||||||||||||| ||       |||| |     |||||    
T  7501147 ttatcgcaaaacgttactta-cttcctgcgaataatttcacatttcctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaatc 7501049  T
Q  219 ctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    || ||||||||||| ||||||||||||||||||||||||||||    
T  7501048 cttggcaaaatctgtaggaaatgtgtttcctgcggaatttaca 7501006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 33179148 - 33179195
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33179148 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 33179195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 44047775 - 44047703
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||| ||  ||||| |||||||||||||||||    
T  44047775 ttatcgcaaaacgttacttct-ttcctacaaataatttcacatttcctgcagataaattcacatttcctacgga 44047703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 37516737 - 37516692
Alignment:
Q  216 atcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||    
T  37516737 atccttggcaaaatctgcaggaaatgtgtttcctgcagaatttaca 37516692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 41218285 - 41218357
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||| ||  |||||||| ||||||||| ||||    
T  41218285 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttcctgcagataattttacatttcctgcgga 41218357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 43700124 - 43700195
Alignment:
Q  132 tatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    |||||||||| ||||||||| ||| ||| |||||||||||||||| ||  ||||||||||||||||| |||||    
T  43700124 tatcgcaaaacgttacttcttttc-tgcgaataatttcacatttcctgcagataatttcacatttccaacgga 43700195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 261
Target Start/End: Complemental strand, 53068331 - 53068292
Alignment:
Q  222 ggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  53068331 ggcaaaatctgcaggaaatgtgtttcctgtggaatttaca 53068292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 53651995 - 53651948
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  53651995 aaatccttggcaaaatctgcaggaaatgcatttcctgcggaatttaca 53651948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 28311468 - 28311396
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    |||||||||||  ||||||| |||||| | |||||||||||||||| ||  ||||| |||||||||||||||||    
T  28311468 ttatcgcaaaacattacttc-cttcctacgaataatttcacatttcctgcagataaattcacatttcctacgga 28311396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 41218403 - 41218440
Alignment:
Q  222 ggcaaaatctgcaggaaatgtgtttcctgcggaattta 259  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  41218403 ggcaaaatcggcaggaaatgtgtttcctgcggaattta 41218440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 12909990 - 12909947
Alignment:
Q  161 aataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||    
T  12909990 aataatttcacatttcctgtagataaattcacatttcctacgga 12909947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 38239550 - 38239503
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||| |||| ||||||||||||||| |||||||||    
T  38239550 aaatccttggcaaaatccgcagaaaatgtgtttcctgcagaatttaca 38239503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 44047681 - 44047634
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||||||||   ||||||||||||||||||    
T  44047681 aaatccttggcaaaatctgcaggaaatacatttcctgcggaatttaca 44047634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 14461256 - 14461184
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||| ||||| |||||||| |||||| | |||||||| ||||||| ||  ||||| |||||||||||||||||    
T  14461256 ttatcacaaaacgttacttc-cttcctacgaataattttacatttcctgcagataaattcacatttcctacgga 14461184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 33179022 - 33179086
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacattt 196  Q
    ||||||||||| ||||||||  ||||||| |||||||||||||||  ||  |||||||||||||||    
T  33179022 ttatcgcaaaacgttacttca-ttcctgcgaataatttcacattttctgcagataatttcacattt 33179086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 37516812 - 37516768
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttc 176  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||||    
T  37516812 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttc 37516768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 53652070 - 53652017
Alignment:
Q  151 tcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||| | |||||||||||||||| ||  ||||| |||||||||||||||||    
T  53652070 tcttcctacgaataatttcacatttcctgcagataaattcacatttcctacgga 53652017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 12909763 - 12909795
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  12909763 caggggcggagccaccccccagctagcctgggc 12909795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 14461162 - 14461114
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||| |||||||||||||||| ||   |||||||||||||||||||    
T  14461162 aaatccttggcaaaatctgcaggacatacatttcctgcggaatttacat 14461114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 23700785 - 23700817
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||| ||||||||||||||||||||||    
T  23700785 ttctcaaaaaggtcttataattagggacggagg 23700817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 23719240 - 23719272
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||| ||||||||||||||||||||||    
T  23719240 ttctcaaaaaggtcttataattagggacggagg 23719272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 23737696 - 23737728
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||| ||||||||||||||||||||||    
T  23737696 ttctcaaaaaggtcttataattagggacggagg 23737728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 25392009 - 25391977
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  25392009 caggggcggagccaccccccagctagcctgggc 25391977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 41218571 - 41218539
Alignment:
Q  88 ggtcaggggcggagccacccccaagctagcctg 120  Q
    |||||||||||||||||||||| ||||||||||    
T  41218571 ggtcaggggcggagccaccccccagctagcctg 41218539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 44047520 - 44047552
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  44047520 caggggcggagccaccccccagctagcctgggc 44047552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 44625634 - 44625666
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  44625634 caggggcggagccaccccccagctagcctgggc 44625666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 49127198 - 49127230
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||| ||||||||||||||||||||||    
T  49127198 ttctcaaaaaggtcttataattagggacggagg 49127230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 4233 - 4154
Alignment:
Q  183 ataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  4233 ataatttcacatttcctacggaatctgcaggaaatcctgggcaaaatctgcaggaaatgtgtttcctacggaatttacat 4154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 4774157 - 4774072
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaat 217  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  4774157 ttatcgcaaaatgttactt-tcttcctgcgaataatttcacatttcttgcggataatttcacatttcctgcggaatctgcaggaaat 4774072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 131 - 261
Target Start/End: Complemental strand, 27460864 - 27460740
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    |||||||||||  ||||||| |||||||| |||||||||||||||| ||  |||||||||||||||||||||||| ||     ||||||| |||||||||    
T  27460864 ttatcgcaaaacattacttc-cttcctgcgaataatttcacatttcctgcagataatttcacatttcctacggaacct-----aaatccttggcaaaatc 27460771  T
Q  231 tgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||||||||||||||| |||||||||||    
T  27460770 tgcaggaaatgtgtttccttcggaatttaca 27460740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 261
Target Start/End: Original strand, 31844571 - 31844691
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| |  ||||| | ||   |||||| ||||| ||     ||||||| |||||||||    
T  31844571 ttatcgcaaaatgttacttc-cttcctgcgaataatttcacatttcctacggata-tatc---tttcctgcggaacct-----aaatccttggcaaaatc 31844660  T
Q  231 tgcaggaaatgtgtttcctgcggaatttaca 261  Q
    |||||||||||||||||||||||||||||||    
T  31844661 tgcaggaaatgtgtttcctgcggaatttaca 31844691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 261
Target Start/End: Complemental strand, 14727515 - 14727374
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga---atct-----gcagga----aatc 218  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||| ||  |||||||||||||||||||| ||   ||||     || | |    ||||    
T  14727515 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttcctgcagataatttcacatttcctacagatatatctttcctgcggaacctaaatc 14727417  T
Q  219 ctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  14727416 cttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 14727374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 27584037 - 27584084
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27584037 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 27584084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 261
Target Start/End: Complemental strand, 6331850 - 6331730
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacggaatctgcaggaaatcctaggcaaaatc 230  Q
    ||||||||||| |||||||| |||||| |||||||||||||||||| |  ||||| | ||   |||||| ||||| ||     ||||||| |||||||||    
T  6331850 ttatcgcaaaacgttacttc-cttccttcaaataatttcacatttcctacggata-tatc---tttcctgcggaacct-----aaatccttggcaaaatc 6331761  T
Q  231 tgcaggaaatgtgtttcctgcggaatttaca 261  Q
    || ||||||||||||||||||||||||||||    
T  6331760 tgtaggaaatgtgtttcctgcggaatttaca 6331730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 4641969 - 4642039
Alignment:
Q  133 atcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||| |||||||| |||||||| |||||||||||||||| || ||||||||||| ||||||| ||||    
T  4641969 atcgcaaaacgttacttc-cttcctgcgaataatttcacatttcctgcggataatttcatatttcctgcgga 4642039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 25011560 - 25011607
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  25011560 aaatccttggcaaaatctgcagaaaatgtgtttcctgcggaatttaca 25011607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 25007649 - 25007577
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| |||||| | |||||||||||||||| ||  ||||| |||||||||||||||||    
T  25007649 ttatcgcaaaacgttacttc-cttcctacgaataatttcacatttcctgcagataaattcacatttcctacgga 25007577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 37153920 - 37153992
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| |||||| | |||||||||||||||| ||  ||||| |||||||||||||||||    
T  37153920 ttatcgcaaaacgttacttc-cttcctacgaataatttcacatttcctgcagataaattcacatttcctacgga 37153992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 44305597 - 44305525
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| |||||| | |||||||||||||||| ||  ||||| |||||||||||||||||    
T  44305597 ttatcgcaaaacgttacttc-cttcctacgaataatttcacatttcctgcagataaattcacatttcctacgga 44305525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 27583963 - 27584015
Alignment:
Q  152 cttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    |||||||| |||||||||||||||| ||  |||||||||||||||||||||||    
T  27583963 cttcctgcgaataatttcacatttcctgcagataatttcacatttcctacgga 27584015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 227 - 262
Target Start/End: Complemental strand, 4774085 - 4774050
Alignment:
Q  227 aatctgcaggaaatgtgtttcctgcggaatttacat 262  Q
    ||||||||||||||||||||||||||||||||||||    
T  4774085 aatctgcaggaaatgtgtttcctgcggaatttacat 4774050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 24646144 - 24646097
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||||||||||||||||| |||||| ||||    
T  24646144 aaatccttggcaaaatctgcaggaaatgtgtttcctacggaatgtaca 24646097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 24745503 - 24745456
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  24745503 aaatccttggcaaaatctgcagaaaatgtgtttcctgcagaatttaca 24745456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 48940440 - 48940487
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| | ||||||||||| ||||||||||||||||||||||||||    
T  48940440 aaatccttgacaaaatctgcatgaaatgtgtttcctgcggaatttaca 48940487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 49898573 - 49898520
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggata 185  Q
    ||||||||||||||||| || |||||||| |||||||||||||||| ||||||||    
T  49898573 ttatcgcaaaatgttacgtc-cttcctgcgaataatttcacatttcctgtggata 49898520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 34459200 - 34459159
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaa 255  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  34459200 aaatccttggcaaaatctgcaggaaatgtgtttcctacggaa 34459159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 14727248 - 14727280
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    |||||||||||||||||||||||||||||||||    
T  14727248 caggggcggagccacccccaagctagcctgggc 14727280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 9527136 - 9527089
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||||| |||||||||||| | ||||||||    
T  9527136 aaatccttggcaaaatctgcaggagatgtgtttcctgtgaaatttaca 9527089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 37154014 - 37154061
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||||||||   ||||||||||||||||||    
T  37154014 aaatccttggcaaaatctgcaggaaatacatttcctgcggaatttaca 37154061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 44238882 - 44238929
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||| || |||||||||||||||| |||||||||    
T  44238882 aaatccttggcaaaatctacaagaaatgtgtttcctgcagaatttaca 44238929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 44305503 - 44305456
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||||||||||||   ||||||||||||||||||    
T  44305503 aaatccttggcaaaatctgcaggaaatacatttcctgcggaatttaca 44305456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 4773936 - 4773969
Alignment:
Q  90 tcaggggcggagccacccccaagctagcctgggc 123  Q
    |||||||||||||||||||| |||||||||||||    
T  4773936 tcaggggcggagccaccccccagctagcctgggc 4773969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 25007393 - 25007426
Alignment:
Q  90 tcaggggcggagccacccccaagctagcctgggc 123  Q
    |||||||||||||||||||| |||||||||||||    
T  25007393 tcaggggcggagccaccccccagctagcctgggc 25007426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 25011467 - 25011539
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| |||| ||| ||||||||  |||||  ||  |||||||||||||||||||||||    
T  25011467 ttatcgcaaaacgttacttc-cttcatgcgaataattttgcattttctgcagataatttcacatttcctacgga 25011539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 33468901 - 33468945
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttc 176  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||||    
T  33468901 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttc 33468945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 37154176 - 37154143
Alignment:
Q  90 tcaggggcggagccacccccaagctagcctgggc 123  Q
    |||||||||||||||||||| |||||||||||||    
T  37154176 tcaggggcggagccaccccccagctagcctgggc 37154143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 25509274 - 25509213
Alignment:
Q  29 aggggtcttataaaaatggacnnnnnnnttctcaaaaacgtcttataattagggacggaggt 90  Q
    |||||||||||||||| ||||       |||||||||  |||||||||||||||||||||||    
T  25509274 aggggtcttataaaaagggacaaaaaaattctcaaaagggtcttataattagggacggaggt 25509213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 27584198 - 27584166
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  27584198 caggggcggagccaccccccagctagcctgggc 27584166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 44305342 - 44305374
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  44305342 caggggcggagccaccccccagctagcctgggc 44305374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 49898345 - 49898377
Alignment:
Q  91 caggggcggagccacccccaagctagcctgggc 123  Q
    ||||||||||||||||||| |||||||||||||    
T  49898345 caggggcggagccaccccccagctagcctgggc 49898377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 261
Target Start/End: Original strand, 41114799 - 41114940
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga---atct-----gcagga----aatc 218  Q
    ||||||||||| |||||||| |||| ||| |||||||||||||||| ||  |||||||||||||||||||||||   ||||     || | |    ||||    
T  41114799 ttatcgcaaaacgttacttc-cttcatgcgaataatttcacatttcctgcagataatttcacatttcctacggatatatctttcttgcggaacctaaatc 41114897  T
Q  219 ctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  41114898 cttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 41114940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 6799909 - 6799956
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6799909 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 6799956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 18299166 - 18299213
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18299166 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 18299213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 12000613 - 12000568
Alignment:
Q  216 atcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  12000613 atccttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 12000568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 41010698 - 41010626
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||| ||  || ||||||||||||||||||||    
T  41010698 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttcctgcagaaaatttcacatttcctacgga 41010626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 261
Target Start/End: Complemental strand, 13203953 - 13203812
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga-at-------ctgcag----gaaatc 218  Q
    |||||||||||||||||||| ||||| || |||||||||||||||   |  ||||||||||||||||||||||| ||       |||| |     |||||    
T  13203953 ttatcgcaaaatgttacttc-cttccagcgaataatttcacattttccgcagataatttcacatttcctacggatatctctttcctgcggaacctaaatc 13203855  T
Q  219 ctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    || |||||||||||||||||| |||||||||||||||||||||    
T  13203854 cttggcaaaatctgcaggaaacgtgtttcctgcggaatttaca 13203812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 22572724 - 22572771
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  22572724 aaatccttggcaaaatctgcaggaaatgtgtttcctggggaatttaca 22572771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 25563027 - 25562980
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  25563027 aaatccttggcaaaatctgcaggaaatgtatttcctgcggaatttaca 25562980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 17148864 - 17148826
Alignment:
Q  223 gcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17148864 gcaaaatctgcaggaaatgtgtttcctgcggaatttaca 17148826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 18299072 - 18299141
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctac 201  Q
    |||||| |||| |||||||| |||||||| |||||||||||||||| ||  ||||||||||||||||||||    
T  18299072 ttatcgtaaaacgttacttc-cttcctgcgaataatttcacatttcctgcagataatttcacatttcctac 18299141  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 6799815 - 6799887
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||| ||||| |||| ||| |||||||| |||||||||||||||| ||  |||||||||||||||||||||||    
T  6799815 ttatcacaaaacgttagttc-cttcctgcgaataatttcacatttcctgcagataatttcacatttcctacgga 6799887  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 29257552 - 29257480
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| ||| |||| |||||||||||||||| ||  ||||| |||||||||||||||||    
T  29257552 ttatcgcaaaacgttacttc-ctttctgcgaataatttcacatttcctgcagataagttcacatttcctacgga 29257480  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 25563158 - 25563091
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcct 199  Q
    ||||||||||| |||||||| ||| ||||||||||||||| ||||| ||  ||||||||||||||||||    
T  25563158 ttatcgcaaaacgttacttc-ctttctgcaaataatttcatatttcctgcagataatttcacatttcct 25563091  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 304148 - 304195
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  304148 aaatccttggcaaaatctgcaagaaatgtgtttcctgcgaaatttaca 304195  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 15651299 - 15651252
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  15651299 aaatccttggcaaaatacgcaggaaatgtgtttcctgcggaatttaca 15651252  T

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Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 261
Target Start/End: Complemental strand, 29257450 - 29257411
Alignment:
Q  222 ggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  29257450 ggcaaaatctgcaggaaatgtgtttcctgcgaaatttaca 29257411  T

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Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 25563116 - 25563070
Alignment:
Q  153 ttcctgcaaataatttcacatttcttgtggataatttcacatttcct 199  Q
    |||||||| ||||||||||||||| || |||||||||||||||||||    
T  25563116 ttcctgcagataatttcacatttcctggggataatttcacatttcct 25563070  T

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Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 304021 - 304093
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||||  || ||| |||||||||||||||| ||  |||||||||||||||||| ||||    
T  304021 ttatcgcaaaacgttacttcttatc-tgcgaataatttcacatttcctgcagataatttcacatttcctgcgga 304093  T

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Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 15651427 - 15651359
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacattt-cttgtggataatttcacatttcct 199  Q
    ||||||||||||||||| || |||||||| |||||||| |||||| | || |||||||||||||||||||    
T  15651427 ttatcgcaaaatgttacgtc-cttcctgcgaataattttacattttcctgcggataatttcacatttcct 15651359  T

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Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 17148982 - 17148910
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||| ||||| |||||||| |||||||| |||||||||||||||| ||  ||||||| |||||||||| ||||    
T  17148982 ttatctcaaaacgttacttc-cttcctgcgaataatttcacatttcctgcagataattccacatttcctgcgga 17148910  T

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Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 33909276 - 33909328
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggat 184  Q
    ||||||||||||||||| || |||| |||||||||||||||||||| |||||||    
T  33909276 ttatcgcaaaatgttacatc-cttcatgcaaataatttcacatttcctgtggat 33909328  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 17249410 - 17249363
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| |||||||||| || ||||||||||||||| ||||||||||    
T  17249410 aaatccttggcaaaatctacaagaaatgtgtttcctgtggaatttaca 17249363  T

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Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 25624798 - 25624738
Alignment:
Q  29 aggggtcttataaaaatggacnnnnnnnttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||||||||| ||||       |||||||||| ||||||||||||||||||||||    
T  25624798 aggggtcttataaaaagggacaaaaaaattctcaaaaaggtcttataattagggacggagg 25624738  T

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Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 12000743 - 12000670
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacattt-cttgtggataatttcacatttcctacgga 204  Q
    ||||||||||||||||| || |||||||| |||||||| |||||| |  | ||||||||||||||||||| ||||    
T  12000743 ttatcgcaaaatgttacgtc-cttcctgcgaataattttacattttccggcggataatttcacatttcctgcgga 12000670  T

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Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 259
Target Start/End: Complemental strand, 41010556 - 41010522
Alignment:
Q  225 aaaatctgcaggaaatgtgtttcctgcggaattta 259  Q
    ||||||||||||||||||||||||||| |||||||    
T  41010556 aaaatctgcaggaaatgtgtttcctgcagaattta 41010522  T

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Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 2475992 - 2475948
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttc 176  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||||    
T  2475992 ttatcgcaaaacgttacttc-cttcctgcgaataatttcacatttc 2475948  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 22572651 - 22572695
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttc 176  Q
    ||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  22572651 ttatcgcaaaacgttactt-tcttcctgcgaataatttcacatttc 22572695  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 5664675 - 5664643
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||| ||||||||||||||||||||||    
T  5664675 ttctcaaaaaggtcttataattagggacggagg 5664643  T

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Target: scaffold0618 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 1881 - 1809
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| ||| |||| |||||||||||||||| ||  ||||| |||||||||||||||||    
T  1881 ttatcgcaaaacgttacttc-ctttctgcgaataatttcacatttcctgcagataagttcacatttcctacgga 1809  T

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Target: scaffold0618; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 261
Target Start/End: Complemental strand, 1779 - 1740
Alignment:
Q  222 ggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  1779 ggcaaaatctgcaggaaatgtgtttcctgcgaaatttaca 1740  T

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Target: scaffold0075 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 11709 - 11637
Alignment:
Q  131 ttatcgcaaaatgttacttctcttcctgcaaataatttcacatttcttgtggataatttcacatttcctacgga 204  Q
    ||||||||||| |||||||| |||||| | |||||||||||||||| ||  ||||| |||||||||||||||||    
T  11709 ttatcgcaaaacgttacttc-cttcctacgaataatttcacatttcctgcagataaattcacatttcctacgga 11637  T

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Target: scaffold0075; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 7002 - 6955
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||  |||||| |||||||||||    
T  7002 aaatccttggcaaaatctgcaggaaatgcatttccttcggaatttaca 6955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 11615 - 11568
Alignment:
Q  214 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 261  Q
    ||||||| ||||||||||||||||||||  ||| ||||||||||||||    
T  11615 aaatccttggcaaaatctgcaggaaatgcattttctgcggaatttaca 11568  T

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Target: scaffold0161 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 3503 - 3442
Alignment:
Q  29 aggggtcttataaaaatggacnnnnnnnttctcaaaaacgtcttataattagggacggaggt 90  Q
    |||||||||||||||| ||||       |||||||||  |||||||||||||||||||||||    
T  3503 aggggtcttataaaaagggacaaaaaaattctcaaaagggtcttataattagggacggaggt 3442  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 65637 - 65669
Alignment:
Q  57 ttctcaaaaacgtcttataattagggacggagg 89  Q
    |||||||||| ||||||||||||||||||||||    
T  65637 ttctcaaaaaggtcttataattagggacggagg 65669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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