View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3206_high_1 (Length: 666)
Name: NF3206_high_1
Description: NF3206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3206_high_1 |
 | |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 170 - 650
Target Start/End: Complemental strand, 34296440 - 34295960
Alignment:
| Q |
170 |
accatcaatgacaccaattttgtctctgagaattgaaaatctggtgcgatgtagaggttttgttaaaatgtctgcaagttgatcctttgtagatatatgt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34296440 |
accatcaatgacaccaattttgtctctgagaattgaaaatctggtgcgatgtagaggttttgttaaaatgtctgcaagttgatcctttgtagatatatgt |
34296341 |
T |
|
| Q |
270 |
gagactcgaattttaccaagttgaaccatctgcctcacaaaatgataatcaagtgcaatatgcttcattctagagtgaaataccggattggaacataagt |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34296340 |
gagactcgaattttaccaagttgaaccatctgcctcacaaaatgataatcaagtgcaatatgcttcattctagagtgaaataccggattggaacataagt |
34296241 |
T |
|
| Q |
370 |
aagtggtgccaatattgtcacaaaaaagagtaggtgtttgatgtggtactccaagttcactcaaaagatttaatagccacatgatttcagctgaagtatt |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34296240 |
aagtggtgccaatattgtcacaaaaaagagtaggtgtttgatgcggtactccaagttcactcaaaagatttaatagccacatgatttcagctgaagtatt |
34296141 |
T |
|
| Q |
470 |
ggcagcagacctgtattctgcctctgtggatgatctagcaactgttctctgtctttttgataaccatgaaacaggattactgccaaagtaaattatgcaa |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
34296140 |
ggcagcagacctgtattctgcctctgtggatgatctagcaattgttctctgtctttttgataaccatgaaacaggattaccgccaaagtaaattatgtaa |
34296041 |
T |
|
| Q |
570 |
gctgatgtagatgttttgtcatcatgattacctccccagtcagcatcagtaaaggcatgcaatttgagatgaggtggtttt |
650 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34296040 |
gctgatgtagatgttttgtcatcatgattacctccccagtcagcatcagtaaaggcatgcaatttgagatgaggtggtttt |
34295960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 404
Target Start/End: Complemental strand, 31347697 - 31347599
Alignment:
| Q |
306 |
acaaaatgataatcaagtgcaatatgcttcattctagagtgaaataccggattggaacataagtaagtggtgccaatattgtcacaaaaaagagtaggt |
404 |
Q |
| |
|
||||| |||||||| | ||||| || |||||||| || |||||||| |||| ||||||| |||||| ||||||||||| |||||||| || |||||| |
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| T |
31347697 |
acaaagtgataatccatggcaatgtgtttcattcttgaatgaaatacgagattagaacataggtaagttgtgccaatattatcacaaaatagtgtaggt |
31347599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 446 - 622
Target Start/End: Complemental strand, 31347557 - 31347381
Alignment:
| Q |
446 |
ccacatgatttcagctgaagtattggcagcagacctgtattctgcctctgtggatgatctagcaactgttctctgtctttttgataaccatgaaacagga |
545 |
Q |
| |
|
|||||||| |||||| | || ||| ||| | |||||||| || || || || || || |||||||| ||||| || |||||| ||||||| ||||||||| |
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| T |
31347557 |
ccacatgacttcagcagtagcatttgcaaccgacctgtactcagcttcagtagacgacctagcaacagttctttgcctttttaataaccaagaaacagga |
31347458 |
T |
|
| Q |
546 |
ttactgccaaagtaaattatgcaagctgatgtagatgttttgtcatcatgattacctccccagtcagcatcagtaaa |
622 |
Q |
| |
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|| | ||||| ||||| || ||||||| ||||| ||| | |||||| || |||||||| || |||||| |||| |
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|
| T |
31347457 |
ttccctccaaaataaatgatataagctgaggtagaagttctatcatcaatgtttcctccccaatctgcatcactaaa |
31347381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 170 - 650
Target Start/End: Original strand, 24485583 - 24486065
Alignment:
| Q |
170 |
accatcaatgacaccaatttt--gtctctgagaattgaaaatctggtgcgatgtagaggttttgttaaaatgtctgcaagttgatcctttgtagatatat |
267 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24485583 |
accatcaatgacaccaattttttgtctctgagaattgaaaatctggtgcgatgtagaggttttgttaaaatgtctgcaagttgatcctttgtagatatat |
24485682 |
T |
|
| Q |
268 |
gtgagactcgaattttaccaagttgaaccatctgcctcacaaaatgataatcaagtgcaatatgcttcattctagagtgaaataccggattggaacataa |
367 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24485683 |
gtgagactcgaattttaccaagttgaaccttctgcctcacaaaatgataatcaagtgcaatatgcttcattctagagtgaaataccggattggaacataa |
24485782 |
T |
|
| Q |
368 |
gtaagtggtgccaatattgtcacaaaaaagagtaggtgtttgatgtggtactccaagttcactcaaaagatttaatagccacatgatttcagctgaagta |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24485783 |
gtaagtggtgccaatattgtcacaaaaaagagtaggtgtttgatgcggtactccaagttcactcaaaagatttaatagccacatgatttcagctgaagta |
24485882 |
T |
|
| Q |
468 |
ttggcagcagacctgtattctgcctctgtggatgatctagcaactgttctctgtctttttgataaccatgaaacaggattactgccaaagtaaattatgc |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
24485883 |
ttggcagcagacctgtattctgcctctgtggatgatctagcaattgttctctgtctttttgataaccatgaaacaggattaccgccaaagtaaattatgt |
24485982 |
T |
|
| Q |
568 |
aagctgatgtagatgttttgtcatcatgattacctccccagtcagcatcagtaaaggcatgcaatttgagatgaggtggtttt |
650 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24485983 |
aagctgatgtagatgttttgtcatcatgattacctccccagtcagcatcagtaaaggcatgcaatttgagatgaggtggtttt |
24486065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 186 - 650
Target Start/End: Original strand, 24493935 - 24494399
Alignment:
| Q |
186 |
attttgtctctgagaattgaaaatctggtgcgatgtagaggttttgttaaaatgtctgcaagttgatcctttgtagatatatgtgagactcgaattttac |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24493935 |
attttgtctctgagaattgaaaatctggtgcgatgtagaggttttgttaaaatgtctgcaagttgatcctttgtagatatatgtgagactcgaattttac |
24494034 |
T |
|
| Q |
286 |
caagttgaaccatctgcctcacaaaatgataatcaagtgcaatatgcttcattctagagtgaaataccggattggaacataagtaagtggtgccaatatt |
385 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24494035 |
caagttgaaccttctgcctcacaaaatgataatcaagtgcaatatgcttcattctagagtgaaataccggattggaacataagtaagtggtgccaatatt |
24494134 |
T |
|
| Q |
386 |
gtcacaaaaaagagtaggtgtttgatgtggtactccaagttcactcaaaagatttaatagccacatgatttcagctgaagtattggcagcagacctgtat |
485 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24494135 |
gtcacaaaaaagagtaggtgtttgatgcggtactccaagttcactcaaaagatttaatagccacatgatttcagctgaagtattggcagcagacctgtat |
24494234 |
T |
|
| Q |
486 |
tctgcctctgtggatgatctagcaactgttctctgtctttttgataaccatgaaacaggattactgccaaagtaaattatgcaagctgatgtagatgttt |
585 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
24494235 |
tctgcctctgtggatgatctagcaattgttctctgtctttttgataaccatgaaacaggattaccgccaaagtaaattatgtaagctgatgtagatgttt |
24494334 |
T |
|
| Q |
586 |
tgtcatcatgattacctccccagtcagcatcagtaaaggcatgcaatttgagatgaggtggtttt |
650 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24494335 |
tgtcatcatgattacctccccagtcagcatcagtaaaggcatgcaatttgagatgaggtggtttt |
24494399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 174 - 641
Target Start/End: Original strand, 58037 - 58504
Alignment:
| Q |
174 |
tcaatgacaccaattttgtctctgagaattgaaaatctggtgcgatgtagaggttttgttaaaatgtctgcaagttgatcctttgtagatatatgtgaga |
273 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| || |||||||| | || || || | |||||||||||| |||| ||||| ||| || || |||| |
|
|
| T |
58037 |
tcaatgacacctattttgtctctgagaagtgaaaaccttgtgcgatgcaatggcttagtcagaatgtctgcaaggtgattctttgaagagatgtgagaga |
58136 |
T |
|
| Q |
274 |
ctcgaattttaccaagttgaaccatctgcctcacaaaatgataatcaagtgcaatatgcttcattctagagtgaaataccggattggaacataagtaagt |
373 |
Q |
| |
|
|| | ||| ||| |||||| |||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||| ||| || ||||| ||||| |
|
|
| T |
58137 |
ctatgagttttccattttgaacttgctgcctcacaaagtgataatcaagtgcaatgtgcttcattcttgagtgaaagaccgaattagagcataaataagt |
58236 |
T |
|
| Q |
374 |
ggtgccaatattgtcacaaaaaagagtaggtgtttgatgtggtactccaagttcactcaaaagatttaatagccacatgatttcagctgaagtattggca |
473 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||| ||| || |||||||| | |||||||||| | |||||||| ||||| ||||||| |||| | |
|
|
| T |
58237 |
tgtgccaatattgtcgcaaaaaagtgtaggaatttgagatggaacaccaagttctcccaaaagatttgagagccacataatttctgctgaagcgttggta |
58336 |
T |
|
| Q |
474 |
gcagacctgtattctgcctctgtggatgatctagcaactgttctctgtctttttgataaccatgaaacaggattactgccaaagtaaattatgcaagctg |
573 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||| ||||||||||| || ||||||| |||||||| ||||||||| || || ||||||| | | |||| |
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|
| T |
58337 |
gcagacctatattctgcttctatggatgatcgcgcaactgttctttgcgtttttgacaaccatgagacaggattatcaccgaaataaattaggtaggctg |
58436 |
T |
|
| Q |
574 |
atgtagatgttttgtcatcatgattacctccccagtcagcatcagtaaaggcatgcaatttgagatga |
641 |
Q |
| |
|
| || |||||||||||||||| |||||| ||||| | |||||||||| | || || ||||| |||||| |
|
|
| T |
58437 |
aagttgatgttttgtcatcataattaccaccccaattagcatcagtatatgcttgtaatttaagatga |
58504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 7707534 - 7707475
Alignment:
| Q |
48 |
ctatttttacgaagaaatcataggagaatgaagctcacgaacaactttggcagacagaaa |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
7707534 |
ctatttttactaagaaatcataggagaatgaagcttacgaacaactttggtagacagaaa |
7707475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 38569673 - 38569621
Alignment:
| Q |
318 |
tcaagtgcaatatgcttcattctagagtgaaataccggattggaacataagta |
370 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| || ||||| || |||||||| |
|
|
| T |
38569673 |
tcaagtgcgatatgcttcattcgagagtgaaaaactggattagagcataagta |
38569621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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