View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3206_high_11 (Length: 352)
Name: NF3206_high_11
Description: NF3206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3206_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 107 - 337
Target Start/End: Original strand, 28625990 - 28626220
Alignment:
| Q |
107 |
taaataaaatgctctgcccccagaggatcgaacatgggtcttggctgaatgaatttggacaataaatagcgctattttaaatatataaacgctatctttc |
206 |
Q |
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| T |
28625990 |
taaataaaatgctctgcccccagaggatcgaacatgggtcttggctgaatgaatttggacaataaatagcgctattttaaatatataaacgttatctttc |
28626089 |
T |
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| Q |
207 |
ataaacgtacgctatctttcataaacttacaatagcctttttaaagcgctatttaaggttgagccataaatagcgtttccatatataaatgagcgccata |
306 |
Q |
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| T |
28626090 |
ataaacctacgctatctttcataaacttacgatagcgtttttaaagcgctatttaaggttgagccataaatagcgtttccatatataaatgagcgccata |
28626189 |
T |
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| Q |
307 |
aacaatcaatactggttttttatttatattt |
337 |
Q |
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| T |
28626190 |
aacaatcaatactggttttttatttatattt |
28626220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 28625870 - 28625947
Alignment:
| Q |
25 |
acatttaaatcattaatttattctggttttaaatttggaggatatatccaacaaaatagaactttttgttacatatgg |
102 |
Q |
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| T |
28625870 |
acatttaaatcattaatttattctggttttaaatttggaggatatatccaacaaaatagaactttttgtgacatatgg |
28625947 |
T |
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