View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3206_high_14 (Length: 306)
Name: NF3206_high_14
Description: NF3206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3206_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 29582907 - 29583180
Alignment:
| Q |
16 |
atgtttggcacaagcaataactttgttcctgaagtactaaatagttgtggttaaatcactttgataaagatgtatgtatggatactaactaagtattgat |
115 |
Q |
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| T |
29582907 |
atgtttggcacaagcaataactttgttcctgaagtactaaatagttgcagttaaatcactttgataaagatgtatgtatggatactaactaagtattgat |
29583006 |
T |
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| Q |
116 |
ttttgaaaaaagcagttactagttaggaatccctatgggaacaatgtgtaccaatatttgttttggattatcaatatgtaactaatttaatagtttgaag |
215 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29583007 |
ttttgaaaaaagcggttactagttaggaatccctatgggaacaatgtgtaccaatatttgttttggattatcaatatgtaactaatttaatagtttgaag |
29583106 |
T |
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| Q |
216 |
gtttgaaaccatcagtttatcacatttataaaacagaattagttattcaacgattcaaaatttcaaacaacatta |
290 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
29583107 |
gtttgaaaccatcagtttatcaca-ttataaaacagcattagttattcaatgattcaaaatttcaaacaacatta |
29583180 |
T |
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