View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3206_high_16 (Length: 242)
Name: NF3206_high_16
Description: NF3206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3206_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 3120945 - 3120740
Alignment:
| Q |
20 |
gttctgattatcaaggcgttcctgctacatattttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgttccacaaggttgtcttcc |
119 |
Q |
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| T |
3120945 |
gttctgattatcaaggcgttcctgctacatattttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgttccacaaggttgtcttcc |
3120846 |
T |
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| Q |
120 |
tggtttgagggttgatgggtgtgatcatgatgttatttatgagagtggaaattgttggcatgatatctttgatgcaataagtcaggctcgtcgattggtc |
219 |
Q |
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| T |
3120845 |
tggtttgagggttgatggtggtgatcatgatgttatttatgagagtggaaattgttggcaagatatctttgatgcaataagtcaggctcgtcgattggtc |
3120746 |
T |
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| Q |
220 |
tatatt |
225 |
Q |
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|||||| |
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| T |
3120745 |
tatatt |
3120740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 3115085 - 3114884
Alignment:
| Q |
24 |
tgattatcaaggcgttcctgctacatattttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgttccacaaggttgtcttcctggt |
123 |
Q |
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||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3115085 |
tgattttcaaggtgttcctgctacatactttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgttccacaaggttgtcttcctagt |
3114986 |
T |
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| Q |
124 |
ttgagggttgatgggtgtgatcatgatgttatttatgagagtggaaattgttggcatgatatctttgatgcaataagtcaggctcgtcgattggtctata |
223 |
Q |
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| T |
3114985 |
ttgagggttgatggtggtgatcatgatttgagttatgagagtggaaattgttggcatgatatctttgatgcaataagtcaggcgcgacgattggtatata |
3114886 |
T |
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| Q |
224 |
tt |
225 |
Q |
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|| |
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| T |
3114885 |
tt |
3114884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 36842267 - 36842200
Alignment:
| Q |
34 |
ggcgttcctgctacatattttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgt |
101 |
Q |
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|||||||||| |||||||||||| ||||||| ||| || || || || |||||||||||||| ||||| |
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| T |
36842267 |
ggcgttcctggtacatattttcctcttagaagaggagggaatgtcactctttatcaagatgcacatgt |
36842200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 28531399 - 28531467
Alignment:
| Q |
37 |
gttcctgctacatattttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgttcca |
105 |
Q |
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| T |
28531399 |
gttcctgccacttattttcctttgaggaaagggggaaatgttactctatatcaagatgctcatgttcca |
28531467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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