View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3206_high_18 (Length: 236)
Name: NF3206_high_18
Description: NF3206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3206_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38248211 - 38248427
Alignment:
| Q |
1 |
ttccctcctattgatctgtgctgcaagactcaactgatactcaacctgaaacaaagaaatctacgttgctcgcaatatacctaacaaactactggactag |
100 |
Q |
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| T |
38248211 |
ttccctcctattgatctgtgctgcaagattcaactgatactcaacctgaaacaaagaaatctacgttgctcgcaatatacctaacaaactactggactag |
38248310 |
T |
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| Q |
101 |
tgttatatatgttttaagagttaaactaagattgnnnnnnncaaacaatgaacatggattccctgcagtcgtgaaactctacattaattcaggcaatcat |
200 |
Q |
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| T |
38248311 |
tgttatatatgttttaagagttaaactaagattgagaaaaacaaacaatgagcatggattccctgcagtcgtgaaactctac----attcaggcaatcat |
38248406 |
T |
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| Q |
201 |
cgcaaaaatcactgattaatt |
221 |
Q |
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||||| ||||||||||||||| |
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| T |
38248407 |
cgcaacaatcactgattaatt |
38248427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 38253364 - 38253533
Alignment:
| Q |
1 |
ttccctcctattgatctgtgctgcaagactcaactg-atactcaacctgaaacaaagaaatctacgttgctcgcaatatacctaacaaactactggacta |
99 |
Q |
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||||||||| ||||||| |||||||||| | |||| ||||||||||||||||||||||||||| |||||||||| |||||| ||||| || ||||||| |
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| T |
38253364 |
ttccctccttttgatctatgctgcaagatttaacttcatactcaacctgaaacaaagaaatctatgttgctcgcattatacccaacaacttaatggacta |
38253463 |
T |
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| Q |
100 |
gtgttatatatgttttaagagttaaactaagattgnnnnnnncaaacaatgaacatggattccctgcagt |
169 |
Q |
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| T |
38253464 |
gtgttatatatgttttaagagttaaactaagattgagataaacaaacaacaaatatggattccctgcagt |
38253533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 38243025 - 38243082
Alignment:
| Q |
15 |
tctgtgctgcaagactcaact-gatactcaacctgaaacaaagaaatctacgttgctc |
71 |
Q |
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| T |
38243025 |
tctgtgctgcaagattcaacttgatactcaatctgaaacaaagaaatccatgttgctc |
38243082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 38238036 - 38238117
Alignment:
| Q |
1 |
ttccctcctattgatctgtgctgcaagactcaac-tgatactcaacctgaaacaaagaaatctacgttgctcgcaatatacc |
81 |
Q |
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| T |
38238036 |
ttccctccttatggtctgtgctgcaagattcaacttgatactcattctgaaacaaagaaaaccatgttgctcactatatacc |
38238117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 17454593 - 17454653
Alignment:
| Q |
1 |
ttccctcctattgatctgtgctgcaagactcaact-gatactcaacctgaaacaaagaaat |
60 |
Q |
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| T |
17454593 |
ttccctcctcatggtctgtgctgcaagattcaacttgatactcaatctgaaacaaagaaat |
17454653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 17433532 - 17433585
Alignment:
| Q |
19 |
tgctgcaagactcaact-gatactcaacctgaaacaaagaaatctacgttgctc |
71 |
Q |
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| T |
17433532 |
tgctgcaagattcaacttgatactcaatctgaaacaaagaaatccatgttgctc |
17433585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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