View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3206_high_8 (Length: 410)

Name: NF3206_high_8
Description: NF3206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3206_high_8
NF3206_high_8
[»] chr1 (1 HSPs)
chr1 (13-394)||(31228130-31228495)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 394
Target Start/End: Complemental strand, 31228495 - 31228130
Alignment:
Q  13 taggcaaccagcaaatagtagagttcacactctcaacacaagcttctctatcttac--gctcctcacacagtttcatgcactgaattgtattacccatac 110  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  31228495 taggcaacaagcaaatagtagagttcacactctcaacacaagcttctctatcttatatgctcctcacacagtttcatgcactgaattgtattacccatac 31228396  T
Q  111 tttgattactgaaatgacttgattttgcttgcatcataaaaacaaaaagaagagcaaattatagttatataatatatgaaagtttgtataaatcatatag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  31228395 tttgattactgaaatgacttgattttgcttgcatcataaaaacaaaaagaagagcaaattatagttatataatatatgaaagtttgtata---------- 31228306  T
Q  211 gaattcaattatatgagaaaaaagagagaaggatgttggagaaatttaacttcatatgcacagttctgcaaacaaaacnnnnnnnnnggataattgcatc 310  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||          |||||||||||||    
T  31228305 ------aattatatgagaaaaaagagagaaggatgttggagaaatttaacttcatatgcacagttctgcaaaaaaaa--aaaaaaaaggataattgcatc 31228214  T
Q  311 caatgtgagtaatatgagtaataacagtttgttacatcattaaatttgtgcaaatgaatgacatttcaacataatatgagtaat 394  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31228213 caatgtgagtaatatgagtaataacagtttgttacattattaaatttgtgcaaatgaatgacatttcaacataatatgagtaat 31228130  T

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