View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3206_high_9 (Length: 407)
Name: NF3206_high_9
Description: NF3206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3206_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 389
Target Start/End: Original strand, 38235608 - 38235990
Alignment:
| Q |
7 |
cggaatcggaatcgaagtcactccgatgcatcaaggaatcgttcttacaatgctgacaggaatagagtcggcgggagagagcgacggcgacccaaatccc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38235608 |
cggaatcggaatcgaagtcactccgatgcatcaaggaatcgttcttacaatgctgacaggaatagagtcggcgggagagagcgacggcgacccaaatccc |
38235707 |
T |
|
| Q |
107 |
cggcgagggtaccggagattccaccagagaagaaaattgtggcgggttcacggtctgtttgtcggagggaattttccgataagctccggcgtgactccgg |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38235708 |
cggcgagggtaccggagattccaccggagaagaaaattgtggcgggttcacggtctgtttgtcggagggaattttccgataagctccggcgtgactccgg |
38235807 |
T |
|
| Q |
207 |
cacgggtgtttgccggcgttcaaggtcgccgtcgtgccacaggacggctggcagcagcaatggtcggagtgagctcaggcagacggaaaaggacggtcgg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38235808 |
cacgggtgtttgccggcgttcaaggtcgccgtcgtgccacaggacggctggcagcagcaatggtcggagtgagctcaggcagacggaaaaggacggccgg |
38235907 |
T |
|
| Q |
307 |
cggtttccgccgacggaggtggtcggggacacaaacgacggcgtttcagtggaggagtcatttacgaatccgcatgtttcttt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38235908 |
cggtttccgccgacggaggtggtcggggacacaaacgacggcgtttcagtggaggagtcatttacgaatccgcatgtttcttt |
38235990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 37609954 - 37610133
Alignment:
| Q |
4 |
aaccggaatcggaatcgaagtcactccgatgcatcaaggaatcgttcttacaatgctgacaggaatagagtcggcgggagagagcgacggcgacccaaat |
103 |
Q |
| |
|
|||||||||||||||| ||| ||| || ||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||||| |
|
|
| T |
37609954 |
aaccggaatcggaatcaaaggcacaccaatgcatcaaggaatcgttcttacaaagctgacaggaatatagtcggtgggagagagcgacgacgacccaaat |
37610053 |
T |
|
| Q |
104 |
ccccggcgagggtaccggagattccaccagagaagaaaattgtggcgggttcacggtctgtttgtcggagggaattttcc |
183 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||||| |||||| |||||| |||| ||| ||| |||||| |||||| |
|
|
| T |
37610054 |
tatcggcgtgggtactggagattccacgggagaagaaagttgtggttggttcagggtcggttcgtcagagggagttttcc |
37610133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 265 - 351
Target Start/End: Original strand, 38644125 - 38644211
Alignment:
| Q |
265 |
aatggtcggagtgagctcaggcagacggaaaaggacggtcggcggtttccgccgacggaggtggtcggggacacaaacgacggcgtt |
351 |
Q |
| |
|
||||||||||||||||| ||| ||||| ||| |||||||||| ||||||| ||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
38644125 |
aatggtcggagtgagcttaggtagacgaaaagggacggtcggtggtttccaccgccggaggttgttggggacacaaacgacggcgtt |
38644211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 13597766 - 13597818
Alignment:
| Q |
4 |
aaccggaatcggaatcgaagtcactccgatgcatcaaggaatcgttcttacaa |
56 |
Q |
| |
|
|||||||||||||||| ||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
13597766 |
aaccggaatcggaatcaaagccacaccaatgcatcaaggaatcgttcttacaa |
13597818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University