View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3206_low_1 (Length: 863)

Name: NF3206_low_1
Description: NF3206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3206_low_1
NF3206_low_1
[»] chr4 (4 HSPs)
chr4 (11-844)||(36468542-36469374)
chr4 (755-828)||(5126429-5126502)
chr4 (11-64)||(43989258-43989311)
chr4 (553-606)||(23061720-23061773)
[»] chr3 (4 HSPs)
chr3 (352-438)||(42434935-42435021)
chr3 (11-91)||(8705743-8705823)
chr3 (11-91)||(9057630-9057710)
chr3 (11-91)||(36684936-36685016)
[»] chr8 (3 HSPs)
chr8 (213-277)||(18479434-18479498)
chr8 (11-54)||(18481301-18481344)
chr8 (351-425)||(21278521-21278595)
[»] chr5 (2 HSPs)
chr5 (11-91)||(41197356-41197436)
chr5 (11-54)||(12378608-12378651)
[»] chr2 (3 HSPs)
chr2 (11-91)||(29894321-29894401)
chr2 (11-54)||(24543281-24543324)
chr2 (553-606)||(28592327-28592380)
[»] chr1 (2 HSPs)
chr1 (11-91)||(21515234-21515314)
chr1 (196-308)||(30654175-30654287)
[»] chr6 (2 HSPs)
chr6 (553-608)||(32893700-32893755)
chr6 (351-425)||(32893882-32893956)


Alignment Details
Target: chr4 (Bit Score: 766; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 766; E-Value: 0
Query Start/End: Original strand, 11 - 844
Target Start/End: Complemental strand, 36469374 - 36468542
Alignment:
Q  11 acatcatcataaatgtaggagctagcttgagatggggctacccttattaattcactcgtgaccccattagcatgcctcctactaatgcaggatcatatca 110  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||    
T  36469374 acatcatcataaatgtaggagctagcttgagatggggttacccttattaattc-ctcgtgaccccattagcttgcctcctactaatgtaggatcatatca 36469276  T
Q  111 ctcgacatgagagttttggaaattgtcctgaaacaattttggcagactgatgacttatccagatgaagattcacaacttgcgagaatatttttcattatt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  36469275 ctcgacatgagagttttggaaattgtcctgaaacaattttggcagactgatgacttgtccagatgaagattcacaacttgcaagaatatttttcattatt 36469176  T
Q  211 tgagcttctctttcttccaccttgaaaaataggaaacaatcatctgcaaacaacaagtgagaaataacatatgcatcattgcaaattcttatgccatgga 310  Q
    |||||||||||||||||| |||||| |||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36469175 tgagcttctctttcttccgccttgacaaatagaaaacaatcatatgcaaacaacaagtgaaaaataacatatgcatcattgcaaattcttatgccatgga 36469076  T
Q  311 gatcccctgacaagagattgccttgccgcagtccccgacaaggtataatcggacctagcacatcattattcacaataacaaaataatcaacagtttccac 410  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36469075 gatcccctaacaagggattgccttgccgcagtccccgacaaggtataatcggacctagcacatccttattcacaataacaaaataatcaacagtttccac 36468976  T
Q  411 acacataagaatccaacaaacccattgatatgcaaatctaatttttaacatgacatccttcaagtacaaccaatctttacggtcataggccttgcttata 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36468975 acacataagaatccaacaaacccattgatatgcaaatctaatttttaacatgacatccttcaagtacaaccaatctttacggtcataggccttgcttata 36468876  T
Q  511 tccagcttaagttgcaacatttttgtccctactacgcctgctaactttcatatggttaaccacttcaattgcaatcatcgcgttatcaagaatagaacac 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36468875 tccagcttaagttgcaacatttttgtccctactacgcctgctaactttcatatggttaaccacttcaattgcaatcatcgcgttatcaagaatagaacac 36468776  T
Q  611 cccgatacaaacaacgattggttaccaaaaatgcatttatgaagaatatgctttagacaattggctaaaacttttccaagcaacttatagagaacattac 710  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36468775 cccgatacaaacaacgattggtcaccaaaaatgcatttatgaagaatatgctttagacgattggctaaaacttttccaagcaacttatagagaacattac 36468676  T
Q  711 acaatgcaaatggccgtcaatccttcaccgacttatgctcaccccctttaggaatcaatgaaatattcgtcgaattaagtgaaggtggaaattgattgtt 810  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36468675 acaatgcaaatggccgtcaatccttcaccgacttatgctcaccccctttaggaatcaatgaaatattcgtcgaattaagtgaaggtggaaattgattgtt 36468576  T
Q  811 gttaagccacatacaacattcacacaaaaatgtc 844  Q
    ||||||||||||||||||||||||||||||||||    
T  36468575 gttaagccacatacaacattcacacaaaaatgtc 36468542  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 755 - 828
Target Start/End: Original strand, 5126429 - 5126502
Alignment:
Q  755 cctttaggaatcaatgaaatattcgtcgaattaagtgaaggtggaaattgattgttgttaagccacatacaaca 828  Q
    |||||||||||||| | |||||| || || ||||| ||||| ||||  ||||||||||||||||||| ||||||    
T  5126429 cctttaggaatcaaagcaatatttgtggagttaagagaagggggaagctgattgttgttaagccacaaacaaca 5126502  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 43989258 - 43989311
Alignment:
Q  11 acatcatcataaatgtaggagctagcttgagatggggctacccttattaattca 64  Q
    ||||||||||||| || ||||||||| ||||||||||||||||| | |||||||    
T  43989258 acatcatcataaacgtgggagctagcatgagatggggctaccctaactaattca 43989311  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 606
Target Start/End: Original strand, 23061720 - 23061773
Alignment:
Q  553 aactttcatatggttaaccacttcaattgcaatcatcgcgttatcaagaataga 606  Q
    |||||||||||| |  ||||| ||||| |||||||| |||||||||||||||||    
T  23061720 aactttcatatgatggaccacctcaatagcaatcatggcgttatcaagaataga 23061773  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 352 - 438
Target Start/End: Complemental strand, 42435021 - 42434935
Alignment:
Q  352 ggtataatcggacctagcacatcattattcacaataacaaaataatcaacagtttccacacacataagaatccaacaaacccattga 438  Q
    |||||||||||||| | ||| |||||||| ||||| ||| |||| |||| |||||| |||||||| | |||||| | ||||||||||    
T  42435021 ggtataatcggacccaccacctcattattaacaatgacagaatagtcaagagtttcaacacacatcataatccatcgaacccattga 42434935  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 8705823 - 8705743
Alignment:
Q  11 acatcatcataaatgtaggagctagcttgagatggggctacccttattaattcactcgtgaccccattagcatgcctccta 91  Q
    ||||||||||||| || ||||||||  ||||||||||||||||| | |||||||   | |||| ||||||| |||||||||    
T  8705823 acatcatcataaacgtgggagctagtatgagatggggctaccctaactaattcataagcgacctcattagcttgcctccta 8705743  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 9057710 - 9057630
Alignment:
Q  11 acatcatcataaatgtaggagctagcttgagatggggctacccttattaattcactcgtgaccccattagcatgcctccta 91  Q
    ||||||||||||| || ||||||||  ||||||||||||||||| | |||||||   | |||| ||||||| |||||||||    
T  9057710 acatcatcataaacgtgggagctagtatgagatggggctaccctaactaattcataagcgacctcattagcttgcctccta 9057630  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 36685016 - 36684936
Alignment:
Q  11 acatcatcataaatgtaggagctagcttgagatggggctacccttattaattcactcgtgaccccattagcatgcctccta 91  Q
    ||||||||||||| ||  |||||||| |||||||||||||||||   |||||||   | |||||||||||| |||||||||    
T  36685016 acatcatcataaacgtgagagctagcatgagatggggctaccctagctaattcatgagcgaccccattagcttgcctccta 36684936  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 18479498 - 18479434
Alignment:
Q  213 agcttctctttcttccaccttgaaaaataggaaacaatcatctgcaaacaacaagtgagaaataa 277  Q
    |||||||||||||||| || |||||||||  ||||| || |||||||| ||||| ||||||||||    
T  18479498 agcttctctttcttccgccctgaaaaataaaaaacagtcgtctgcaaataacaaatgagaaataa 18479434  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 18481344 - 18481301
Alignment:
Q  11 acatcatcataaatgtaggagctagcttgagatggggctaccct 54  Q
    ||||||||||||| || ||||||||| |||||||||||||||||    
T  18481344 acatcatcataaacgtgggagctagcatgagatggggctaccct 18481301  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 351 - 425
Target Start/End: Original strand, 21278521 - 21278595
Alignment:
Q  351 aggtataatcggacctagcacatcattattcacaataacaaaataatcaacagtttccacacacataagaatcca 425  Q
    |||||||||||| |||| ||  ||||| || ||||||||| | |||||||||||||| |||||||| | ||||||    
T  21278521 aggtataatcggccctaccaactcattgttaacaataacagagtaatcaacagtttcaacacacatcataatcca 21278595  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 41197356 - 41197436
Alignment:
Q  11 acatcatcataaatgtaggagctagcttgagatggggctacccttattaattcactcgtgaccccattagcatgcctccta 91  Q
    ||||||||||||| || ||||||||| |||||||||||||||||   |||||||   | ||||||||| || |||||||||    
T  41197356 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctccta 41197436  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 12378608 - 12378651
Alignment:
Q  11 acatcatcataaatgtaggagctagcttgagatggggctaccct 54  Q
    ||||||||||||| || ||||||||| |||||||||||||||||    
T  12378608 acatcatcataaacgtgggagctagcatgagatggggctaccct 12378651  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 29894321 - 29894401
Alignment:
Q  11 acatcatcataaatgtaggagctagcttgagatggggctacccttattaattcactcgtgaccccattagcatgcctccta 91  Q
    ||||||||||||| || ||||||||| |||||||||||||||||   |||||||   | ||||||||| || |||||||||    
T  29894321 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctccta 29894401  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 24543324 - 24543281
Alignment:
Q  11 acatcatcataaatgtaggagctagcttgagatggggctaccct 54  Q
    ||||||||||||| || ||||||||| |||||||||||||||||    
T  24543324 acatcatcataaacgtgggagctagcatgagatggggctaccct 24543281  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 606
Target Start/End: Original strand, 28592327 - 28592380
Alignment:
Q  553 aactttcatatggttaaccacttcaattgcaatcatcgcgttatcaagaataga 606  Q
    |||||||||||| |  ||||| ||||| |||||||| |||||||||||||||||    
T  28592327 aactttcatatgatggaccacctcaatagcaatcatggcgttatcaagaataga 28592380  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 21515314 - 21515234
Alignment:
Q  11 acatcatcataaatgtaggagctagcttgagatggggctacccttattaattcactcgtgaccccattagcatgcctccta 91  Q
    ||||||||||||| || ||||||||| |||||||||||||||||   |||||||   | ||||||||| || |||||||||    
T  21515314 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctccta 21515234  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 30654175 - 30654287
Alignment:
Q  196 atatttttcattatttgagcttctctttcttccaccttgaaaaataggaaacaatcatctgcaaacaacaagtgagaaataacatatgcatcattgcaaa 295  Q
    ||||||||||| | |||||||||||  |||||| || ||| ||| ||||||||||||| |||||| || | |||||| ||||||   |||||| |||| |    
T  30654175 atatttttcatcacttgagcttctcgatcttccgccctgagaaaaaggaaacaatcatttgcaaataataggtgagatataacaggcgcatcagtgcata 30654274  T
Q  296 ttcttatgccatg 308  Q
    ||| |||| ||||    
T  30654275 ttcgtatgtcatg 30654287  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 608
Target Start/End: Complemental strand, 32893755 - 32893700
Alignment:
Q  553 aactttcatatggttaaccacttcaattgcaatcatcgcgttatcaagaatagaac 608  Q
    |||||||||||| |  ||||| ||||| ||||||||| ||||||||||||||||||    
T  32893755 aactttcatatgatgcaccacctcaatagcaatcatcacgttatcaagaatagaac 32893700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 351 - 425
Target Start/End: Complemental strand, 32893956 - 32893882
Alignment:
Q  351 aggtataatcggacctagcacatcattattcacaataacaaaataatcaacagtttccacacacataagaatcca 425  Q
    ||||||||||||||||| ||  |||||||| ||||||||| | || ||||||  |||||||||||| | ||||||    
T  32893956 aggtataatcggacctaccaactcattattaacaataacagagtagtcaacaagttccacacacatcataatcca 32893882  T

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