View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3206_low_12 (Length: 374)
Name: NF3206_low_12
Description: NF3206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3206_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 359
Target Start/End: Complemental strand, 36549549 - 36549205
Alignment:
| Q |
15 |
gacatataaacatgtgtctggaaaaagagagtttttcctctgttgcccaccatcccccaatcttttcacagcaaaagacaccccattctgtagtaccaca |
114 |
Q |
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| T |
36549549 |
gacatataaacatgtgtctggaaaaagagagtttttcctctgttgcccaccatcccccaatcttttcacagcaaaagacaccccattctgtagtaccaca |
36549450 |
T |
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| Q |
115 |
ttatacacagtactcaaaactcatccagaaacaaaattaaaagatgatacatgatttaaagatcagagaacactgacacactccaatgattatcggctgt |
214 |
Q |
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| T |
36549449 |
ttatacacagtactcaaaactcatccagaaacaaaattaaaagatgatacatgatttaaatatcggagaacactgacacactccaatgattatcggctgt |
36549350 |
T |
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| Q |
215 |
gcaatctgcgcagctcctctgagcactcaatagaaaagtcacgagtttctggctgctccacttcaatagacacttcatttaacgcagaaggagctgcttg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36549349 |
gcaatctgcgcagctcctctgagcactcaatagaaaagtcacgagtttctggctgctccacttcaatagacacttcatttaacgcagaaggagctgcttg |
36549250 |
T |
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| Q |
315 |
gctagaatttctcttaggcttcttataaagttgagataatgcttg |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36549249 |
gctagaatttctcttaggcttcttataaagttgagataatgcttg |
36549205 |
T |
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