View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3206_low_14 (Length: 346)
Name: NF3206_low_14
Description: NF3206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3206_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 51005024 - 51005352
Alignment:
| Q |
1 |
atctcgaagaaaatgaaaaacttcgtcataagaaattttaaatgtgtaaagaactaataatatcattcattttaaaataaccagtgaaaaagttggaaat |
100 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
51005024 |
atctctaaaaaaatgaaaaacttcgtcataagaaattttaaatgtgtaaagaactaattatttcatttattttaaaataaccagtgaaagagttggaaat |
51005123 |
T |
|
| Q |
101 |
accatccagaagatgcttcatttgtaaaattatgtgttgattctaacttgatgtcttgatgttacataagatgaaatttttaagtgatttctttagagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51005124 |
accatccagaagatgcttcatttgtaaaattatgtgttgattctaa--------cttgatgttacataagatgaaatttttaagtgatttctttagagaa |
51005215 |
T |
|
| Q |
201 |
tctgcatgggaattttaccacacattatatctcccagtatttcaaggaggaaaggtaaac--aag---nnnnnnnnctttggtaaac-aaattgaatttt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
51005216 |
tctgcatgggaattttaccacacattatatctcccagtatttcaaggaggaaagttaaacttaagtttttttttttctttggtaaacaaaattgaatttt |
51005315 |
T |
|
| Q |
295 |
gaacatacaagattttagctgctctgttacattgttt |
331 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
51005316 |
gaacatacaagattttagctgctctgttaaattgttt |
51005352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University