View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3206_low_23 (Length: 204)

Name: NF3206_low_23
Description: NF3206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3206_low_23
NF3206_low_23
[»] chr4 (7 HSPs)
chr4 (1-173)||(14178664-14178837)
chr4 (1-173)||(28607025-28607198)
chr4 (1-173)||(28611787-28611960)
chr4 (1-173)||(14173910-14174083)
chr4 (15-173)||(11104456-11104615)
chr4 (1-173)||(44161561-44161732)
chr4 (90-173)||(48826916-48827000)
[»] chr8 (2 HSPs)
chr8 (1-173)||(12930649-12930822)
chr8 (1-173)||(12935395-12935568)
[»] chr7 (5 HSPs)
chr7 (1-173)||(37040645-37040818)
chr7 (13-173)||(15290223-15290374)
chr7 (15-173)||(12082002-12082160)
chr7 (13-173)||(12098988-12099145)
chr7 (1-44)||(15302917-15302960)
[»] chr1 (1 HSPs)
chr1 (1-173)||(34907112-34907285)
[»] chr2 (1 HSPs)
chr2 (1-163)||(8539156-8539318)
[»] chr3 (1 HSPs)
chr3 (1-172)||(51302134-51302306)
[»] chr5 (2 HSPs)
chr5 (1-171)||(42911210-42911381)
chr5 (1-150)||(29107117-29107265)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 14178664 - 14178837
Alignment:
1 acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14178664 acaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 14178763  T
101 taacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctct 173  Q
    ||||||||||||| | ||||||||||||||| |||||| ||| |||||||   |||||||||||||||||||||    
14178764 taacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctct 14178837  T

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Target: chr4; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 28607198 - 28607025
Alignment:
1 acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28607198 acaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 28607099  T
101 taacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctct 173  Q
    ||||||||||||| | ||||||||||||||| |||||| ||| |||||||   |||||||||||||||||||||    
28607098 taacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctct 28607025  T

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Target: chr4; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 28611960 - 28611787
Alignment:
1 acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28611960 acaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 28611861  T
101 taacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctct 173  Q
    ||||||||||||| | ||||||||||||||| |||||| ||| |||||||   |||||||||||||||||||||    
28611860 taacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctct 28611787  T

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Target: chr4; HSP #4
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 14173910 - 14174083
Alignment:
1 acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 100  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14173910 acaaagtttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 14174009  T
101 taacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctct 173  Q
    ||||||||||||| | ||||||||||||||| |||||| ||| |||||||   |||||||||||||||||||||    
14174010 taacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctct 14174083  T

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Target: chr4; HSP #5
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 11104456 - 11104615
Alignment:
15 tgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgt 114  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
11104456 tgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtaggaaaaatacaccgggtggatatcatctctataacttctaggtgt 11104555  T
115 tgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctct 173  Q
    | ||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||    
11104556 tataaaataatagcatttgaataggagtgggtctcacgggaaacactatattgtatctct 11104615  T

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Target: chr4; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 44161561 - 44161732
Alignment:
1 acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 100  Q
    |||||||||||||||||  ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44161561 acaaagcttctgtgtgt--agaggtgtgtgagaggaataatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 44161658  T
101 taacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctct 173  Q
    ||||||||||||| | ||||||||||||||| |||||| ||| ||||| |   |||||||||||||||||||||    
44161659 taacttctaggtgctataaaataatagcattagaatagaagtaggtcttacgggaaacactatattgtatctct 44161732  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 48827000 - 48826916
Alignment:
90 tatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctct 173  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||||||||  |||||   |||||||||||||||||||||    
48827000 tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctct 48826916  T

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Target: chr8 (Bit Score: 130; Significance: 1e-67; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 12930649 - 12930822
Alignment:
1 acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12930649 acaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 12930748  T
101 taacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctct 173  Q
    ||||||||||||| | ||||||||||||||| |||||  ||| |||||||   |||||||||||||||||||||    
12930749 taacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctct 12930822  T

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Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 12935395 - 12935568
Alignment:
1 acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12935395 acaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 12935494  T
101 taacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctct 173  Q
    ||||||||||||| | ||||||||||||||| || ||  ||| |||||||   |||||||||||||||||||||    
12935495 taacttctaggtgctataaaataatagcattagagtaaaagtaggtctcacgggaaacactatattgtatctct 12935568  T

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Target: chr7 (Bit Score: 130; Significance: 1e-67; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 37040818 - 37040645
Alignment:
1 acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
37040818 acaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacatcgggtgggtatcatctcta 37040719  T
101 taacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatag-aaacactatattgtatctct 173  Q
    ||||||||||||| | ||||||||||||||| |||||| ||| |||||||  | ||||||||||||||||||||    
37040718 taacttctaggtgctataaaataatagcattagaatagaagtaggtctcacggaaaacactatattgtatctct 37040645  T

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Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 15290223 - 15290374
Alignment:
13 tgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggt 112  Q
    ||||||||||||||||||||||      ||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
15290223 tgtgtgtagaagtgtgtgagaa------tagagtgttgactaaatccagaaagtgtgg-aaaaatacaccgggtgggtatcatctctataacttctaggt 15290315  T
113 gttgtaaaataatagcattcgaataggagtgggtctcatagaaacactatattgtatctct 173  Q
    | ||  ||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
15290316 gctg--aaataatagcattcgaataggagtgggtctcacggaaacactatattgtatctct 15290374  T

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Target: chr7; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 12082002 - 12082160
Alignment:
15 tgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgt 114  Q
    |||||||||||||||||  |||||| |||||||||| ||||||||||| |  | |||||||||| | ||||| ||||| |||||||||||||||||| |     
12082002 tgtgtagaagtgtgtgatcagaaaattagagtgttgggtaaatccagaaaaag-gggaaaaatatatcgggtaggtattatctctataacttctaggcgc 12082100  T
115 tgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctct 173  Q
    | |||||||||| |||| ||||||||| | |||||| |||||||||||||||||||||||    
12082101 tataaaataataacatttgaataggagcgagtctcattagaaacactatattgtatctct 12082160  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 12098988 - 12099145
Alignment:
13 tgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggt 112  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||| |||||  | | |  |||||| |  | ||| |||||||||||||||||| |||||    
12098988 tgtgtgtagaagtatgtgaaaggaaaaatagagtgttgagtaaattcagag--tctcg--aaaatagattgagtgagtatcatctctataacttttaggt 12099083  T
113 gttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctct 173  Q
    ||| |||||||||| |||| ||||||||||| |||||| ||||||||| ||||||| |||||    
12099084 gttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctct 12099145  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15302917 - 15302960
Alignment:
1 acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaataga 44  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
15302917 acaaagcttctgtgtgtgtagaagtgtgtgagagcaaaaataga 15302960  T

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Target: chr1 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 34907112 - 34907285
Alignment:
1 acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34907112 acaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 34907211  T
101 taacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctct 173  Q
    ||||||||||||| | ||||||||||||||| |||||  ||| |||||||   |||||||||||||||||||||    
34907212 taacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctct 34907285  T

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Target: chr2 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 8539156 - 8539318
Alignment:
1 acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 100  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||||| ||| |||||||||||||||    
8539156 acaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatatagtgttcagtaaattcagagagtgtgggaaaaatacatcggatgggtatcatctcta 8539255  T
101 taacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatagaaacactata 163  Q
    |||||| |||||| ||||||||||||||| ||||||||||||||||||||  |||||||||||    
8539256 taacttttaggtgctgtaaaataatagcaatcgaataggagtgggtctcacggaaacactata 8539318  T

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Target: chr3 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 51302134 - 51302306
Alignment:
1 acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 100  Q
    |||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||  ||||||||||||||||| ||||||||||    
51302134 acaaagcttctgtgtgtgtagaagtgtgtgtgaggaaaaatagagtattgagtaaatccagagagtgtggataaaatacaccgggtgggaatcatctcta 51302233  T
101 taacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctc 172  Q
    ||||||||||||| | ||||| ||| ||||||||||||||||||||||||   ||||||||||||||||||||    
51302234 taacttctaggtgctataaaacaattgcattcgaataggagtgggtctcacgggaaacactatattgtatctc 51302306  T

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Target: chr5 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 42911381 - 42911210
Alignment:
1 acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctcta 100  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
42911381 acaaagcttctgtgtgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtggaaaaaatacactgggtgggtatcatctcta 42911282  T
101 taacttctaggtgttgtaaaataatagcattcgaataggagtgggtctc-atagaaacactatattgtatct 171  Q
    |||||||| |||| | ||||||||||||||| |||||| ||| |||||| |  |||||||||||||||||||    
42911281 taacttcttggtgctataaaataatagcattagaatagaagtaggtctcaagggaaacactatattgtatct 42911210  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 29107265 - 29107117
Alignment:
1 acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggt-gggtatcatctct 99  Q
    ||||||||||| ||| |||||||||||||||||  ||||||||  |||||||||||||||||||||||||||||||||||  |||| ||||||||||| |    
29107265 acaaagcttctctgtatgtagaagtgtgtgagagaaaaaatag--tgttgagtaaatccagagagtgtgggaaaaatacattgggtggggtatcatcttt 29107168  T
100 ataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca 150  Q
    |||||||||||||| |  |||||||||||||| |||||| ||| |||||||    
29107167 ataacttctaggtgctaaaaaataatagcattagaatagaagtaggtctca 29107117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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