View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3206_low_4 (Length: 570)

Name: NF3206_low_4
Description: NF3206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3206_low_4
NF3206_low_4
[»] chr6 (4 HSPs)
chr6 (255-565)||(32602268-32602573)
chr6 (255-565)||(32592121-32592431)
chr6 (12-222)||(32592436-32592646)
chr6 (14-222)||(32602578-32602789)
[»] chr1 (6 HSPs)
chr1 (356-451)||(35124830-35124925)
chr1 (356-444)||(34579652-34579740)
chr1 (28-155)||(35125149-35125273)
chr1 (172-242)||(35125041-35125111)
chr1 (107-150)||(34581190-34581233)
chr1 (172-225)||(34581094-34581147)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 255 - 565
Target Start/End: Complemental strand, 32602573 - 32602268
Alignment:
Q  255 atccattgttcattcaaatatatccattttttcttttatgattcacacataaaaatacacataattttctccaattaacttcatgaaagtatatagtttc 354  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | |||||||||||||||||||    
T  32602573 atccattgttcattcaaatatatccattttttcttttatgattctcacataaaaatgcacataattttctccaattaaatacatgaaagtatatagtttc 32602474  T
Q  355 ctaatcaattatatttatgatgttcagatggaatagttggaaccatttcggttgtgatataaatgaaagtttaatccgagatacaggtatatatgtttat 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32602473 ctaatcaattatatttatgatgttcagatggaatagttggaaccatttcggttgtgatataaatgaaagtttaatccgagatacaggtatatatgtttat 32602374  T
Q  455 tatcattattatgatgttccctaagctattattttcacagtttaaatatgtttaattcaattgaagtaaacaatattgatttatcatttcagctgatgcg 554  Q
    ||||||||||||||||||||     |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  32602373 tatcattattatgatgttcc-----ctattatttttacagtttaaatatatttaattcaattgaagtaaacaatattgatttatcatttcagctgatgca 32602279  T
Q  555 atggtgtcaac 565  Q
    |||||||||||    
T  32602278 atggtgtcaac 32602268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 255 - 565
Target Start/End: Complemental strand, 32592431 - 32592121
Alignment:
Q  255 atccattgttcattcaaatatatccattttttcttttatgattcacacataaaaatacacataattttctccaattaacttcatgaaagtatatagtttc 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||| ||||||||    
T  32592431 atccattgttcattcaaatatatccattttttcttttatgattcacacgtaaaaatacacataattttctccaattaaatacatgaaagtacatagtttc 32592332  T
Q  355 ctaatcaattatatttatgatgttcagatggaatagttggaaccatttcggttgtgatataaatgaaagtttaatccgagatacaggtatatatgtttat 454  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32592331 ctaatcaattatatttatgattttcagatggaatagttggaaccatttcggttgtgatataaatgaaagtttaatccgagatacaggtatctatgtttat 32592232  T
Q  455 tatcattattatgatgttccctaagctattattttcacagtttaaatatgtttaattcaattgaagtaaacaatattgatttatcatttcagctgatgcg 554  Q
    |||||||||||||||||||||||||| |||||||| |||||||| |||| | ||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  32592231 tatcattattatgatgttccctaagccattatttttacagtttagatatatgtaattcaattgatctaaactatattgatttatcatttcagctgatgcg 32592132  T
Q  555 atggtgtcaac 565  Q
    |||||||||||    
T  32592131 atggtgtcaac 32592121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 32592646 - 32592436
Alignment:
Q  12 tattcatcatccataggttcattggaagttcaaataattagagcaatgactaaattgatggtgcttgcattttgtatcctcgtgttgctgaatattattg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32592646 tattcatcatccataggttcattggaagttcaaataattagagcaatgactaaattgatggtgcttgcattttgtatcctcgtgttgctgaatattattg 32592547  T
Q  112 caagtgttccatcatcttcagctgctcctttattaggaaacaacaatgtaaccaaagttgagagttatatgttgcaaaatggacttggtcagacaccccc 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32592546 catgtgttccatcatcttcagctgctcctttattaggaaacaacaatgtaaccaaagttgagagttatatgttgcaaaatggacttggtcagacacctcc 32592447  T
Q  212 catggggtatg 222  Q
    |||||||||||    
T  32592446 catggggtatg 32592436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 32602789 - 32602578
Alignment:
Q  14 ttcatcatccataggttcattggaagttcaaataattagagcaatgactaaattgatggtgcttgcattttgtatcctcgtgttgctgaatattattgca 113  Q
    ||||| || ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32602789 ttcattattcataggttcattggaagttcaaataattagagcaatggctagattgatggtgcttgcattttgtatcctcatgttgctgaatattattgca 32602690  T
Q  114 agtgttccatcatcttcagctgctcctttattaggaaaca---acaatgtaaccaaagttgagagttatatgttgcaaaatggacttggtcagacacccc 210  Q
    |||||||||||||||||||||||||  |||||||||||||   |||||||||||||| || ||||||||||||||||||||||||||||||||||||| |    
T  32602689 agtgttccatcatcttcagctgctcgattattaggaaacaacaacaatgtaaccaaaattaagagttatatgttgcaaaatggacttggtcagacacctc 32602590  T
Q  211 ccatggggtatg 222  Q
    ||||||||||||    
T  32602589 ccatggggtatg 32602578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 356 - 451
Target Start/End: Complemental strand, 35124925 - 35124830
Alignment:
Q  356 taatcaattatatttatgatgttcagatggaatagttggaaccatttcggttgtgatataaatgaaagtttaatccgagatacaggtatatatgtt 451  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35124925 taatcaattatacatatgatgttcagatggaatagttggaaccatttcggttgtgatattaatgaaagtttaatccgagatacaggtatatatgtt 35124830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 356 - 444
Target Start/End: Complemental strand, 34579740 - 34579652
Alignment:
Q  356 taatcaattatatttatgatgttcagatggaatagttggaaccatttcggttgtgatataaatgaaagtttaatccgagatacaggtat 444  Q
    ||||||||||||  ||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||    
T  34579740 taatcaattatacatatgatgatcagatggaatagctggaaccattttggttgtgatatcaatgaaagtttaatccaagacacaggtat 34579652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 35125273 - 35125149
Alignment:
Q  28 gttcattggaagttcaaataattagagcaatgactaaattgatggtgcttgcattttgtatcctcgtgttgctgaatattattgcaagtgttccatcatc 127  Q
    ||||||||||||| |||||||||||||||||| |||   ||||||||||||  ||||  ||||| ||| |  ||||   |||||||||||||||||||||    
T  35125273 gttcattggaagtgcaaataattagagcaatggctagggtgatggtgcttgtgttttacatcctagtgctagtgaa---tattgcaagtgttccatcatc 35125177  T
Q  128 ttcagctgctcctttattaggaaacaac 155  Q
    ||||||||||| ||||||||||| ||||    
T  35125176 ttcagctgctcgtttattaggaaccaac 35125149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 35125111 - 35125041
Alignment:
Q  172 agagttatatgttgcaaaatggacttggtcagacaccccccatggggtatgctataccttctttatctata 242  Q
    |||||||| |||| ||||||||||||||||||||||| ||||||||||||| |||||| ||| ||| ||||    
T  35125111 agagttatttgttacaaaatggacttggtcagacacctcccatggggtatgttataccctctctatgtata 35125041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 34581233 - 34581190
Alignment:
Q  107 tattgcaagtgttccatcatcttcagctgctcctttattaggaa 150  Q
    |||||||||| ||||||||||| ||||||||| |||||||||||    
T  34581233 tattgcaagtattccatcatctacagctgctcgtttattaggaa 34581190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 34581147 - 34581094
Alignment:
Q  172 agagttatatgttgcaaaatggacttggtcagacaccccccatggggtatgcta 225  Q
    |||||||||||||||||||||||||||| |  || || ||||||||||| ||||    
T  34581147 agagttatatgttgcaaaatggacttggacgtactcctcccatggggtaagcta 34581094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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