View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3206_low_5 (Length: 556)
Name: NF3206_low_5
Description: NF3206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3206_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 4 - 540
Target Start/End: Complemental strand, 45084089 - 45083552
Alignment:
| Q |
4 |
aaaatcatgaagagtccaagattccaaaattcctacgtaatttcctttccttt-----gtgtatactgtagtttttatccatcgttctgtcatatatata |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45084089 |
aaaatcatgaagagtccaagattccaaaattcctacgtaatttcctttcctttcctttgtgtatactgtagtttttatccatcgttcagtcatata---- |
45083994 |
T |
|
| Q |
99 |
cctgttttatgccactgtttcaatggttttcgttgnnnnnnnnngtctaagaacttgcggttattttannnnnnngtacatagatttatcactattgttt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45083993 |
cctgttttatgccactgtttcaatggttttcgttgtttttttttgtctaagaacttgcggttattttatttttttgtacatagatttatcactattgttt |
45083894 |
T |
|
| Q |
199 |
tgtgcaggttatacgtgtgatctctgtagttgtgatattgggaacactcgcagaatgcagaataccaagtattagtaaattgaataactttgattatcct |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45083893 |
tgtgcaggttatacgtgtgatctctgtagttgtgatattgggaacactagcagaatgcagaataccaagtattagtaaattgaataactttgattatcca |
45083794 |
T |
|
| Q |
299 |
gctatcagttgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataacca |
398 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45083793 |
gctatcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataacca |
45083694 |
T |
|
| Q |
399 |
atcttagccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcaccctttt |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45083693 |
atcttagccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaactggaagcttcaatctcacaagccatttcactctttt |
45083594 |
T |
|
| Q |
499 |
tctccaaaaagatgctgtcattctcgcatctcaggtatatat |
540 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45083593 |
tctccaaaaagatgctgtcattcttgcatctcaggtatatat |
45083552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 192 - 540
Target Start/End: Complemental strand, 45076485 - 45076137
Alignment:
| Q |
192 |
attgttttgtgcaggttatacgtgtgatctctgtagttgtgatattgggaacactcgcagaatgcagaataccaagtattagtaaattgaataactttga |
291 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || ||||||| || || | |||||||||| | |||||||| |||||||||||| |||||||| |
|
|
| T |
45076485 |
attgttttgtgcaggttattggtgtgatctctgtacttctgatatttggttcattagcagaatgcaaagaaccaagtagtagtaaattgaagaactttga |
45076386 |
T |
|
| Q |
292 |
ttatcctgctatcagttgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattcagca |
391 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45076385 |
ttatccagctatcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattcagca |
45076286 |
T |
|
| Q |
392 |
ataaccaatcttagccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttca |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45076285 |
ataaccaatcttagccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttca |
45076186 |
T |
|
| Q |
492 |
ccctttttctccaaaaagatgctgtcattctcgcatctcaggtatatat |
540 |
Q |
| |
|
| |||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
45076185 |
ctctttttctccaaaaagattctgtcattcttgcatctcaggtatatat |
45076137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 179 - 541
Target Start/End: Complemental strand, 45079622 - 45079260
Alignment:
| Q |
179 |
tagatttatcactattgttttgtgcaggttatacgtgtgatctctgtagttgtgatattgggaacactcgcagaatgcagaataccaagtattagtaaat |
278 |
Q |
| |
|
|||| |||| || ||||||||||||||||||| ||||||| ||||||||| ||||||||||| |||| |||||||||||| ||||||||| || ||||| |
|
|
| T |
45079622 |
tagacttataaccattgttttgtgcaggttattggtgtgatatctgtagttctgatattgggatcactagcagaatgcagagtaccaagtagtattaaat |
45079523 |
T |
|
| Q |
279 |
tgaataactttgattatcctgctatcagttgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacccttaacacaaaggc |
378 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||| || |
|
|
| T |
45079522 |
tgaacaactttgattatcctgcaatcaattgcagaaaacacagtgcagttttaacagattttggtgctgttggtgatggcaaaacccttaacacaaaagc |
45079423 |
T |
|
| Q |
379 |
atttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaaccggaagcttcaatctc |
478 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45079422 |
ttttaatgcagcaataaccaaccttagccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaaccggaagcttcaatctc |
45079323 |
T |
|
| Q |
479 |
acaagccatttcaccctttttctccaaaaagatgctgtcattctcgcatctcaggtatatatt |
541 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
45079322 |
acaagccatttcactctttttctccaaaaagatgctgttattcttggatctcaggtatatatt |
45079260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 177 - 537
Target Start/End: Complemental strand, 45068863 - 45068503
Alignment:
| Q |
177 |
catagatttatcactattgttttgtgcaggttatacgtgtgatctctgtagttgtgatattgggaacactcgcagaatgcagaataccaagtattagtaa |
276 |
Q |
| |
|
|||||||| || ||| ||||||| |||||||||| ||||||| ||| ||||| ||||||||| | |||| |||||||||||| |||||||| || ||| |
|
|
| T |
45068863 |
catagattaattactgttgttttatgcaggttatttgtgtgatttctatagttttgatattggtatcactagcagaatgcagagaaccaagtagtattaa |
45068764 |
T |
|
| Q |
277 |
attgaataactttgattatcctgctatcagttgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacccttaacacaaag |
376 |
Q |
| |
|
|||||| | |||||| || | ||| |||| |||| ||||||||| ||||||||| ||||||||||||| ||||||||| || |||||||||||||||||| |
|
|
| T |
45068763 |
attgaacagctttgactaccatgcaatcaattgccgaaaacacaatgcagttttaacagattttggtgctgttggtgacggcaaaacccttaacacaaag |
45068664 |
T |
|
| Q |
377 |
gcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaaccggaagcttcaatc |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45068663 |
gcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaacaggaagcttcaatc |
45068564 |
T |
|
| Q |
477 |
tcacaagccatttcaccctttttctccaaaaagatgctgtcattctcgcatctcaggtata |
537 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | |||||||||||| |||||||||||||| |
|
|
| T |
45068563 |
tcacaagccatttcactctttttctccaaaagggtgctgtcattcttgcatctcaggtata |
45068503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 288 - 536
Target Start/End: Complemental strand, 34506185 - 34505937
Alignment:
| Q |
288 |
ttgattatcctgctatcagttgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattc |
387 |
Q |
| |
|
||||||| | ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| | |
|
|
| T |
34506185 |
ttgattaccttgcaatcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacctctaacacaaaagcttttaatac |
34506086 |
T |
|
| Q |
388 |
agcaataaccaatcttagccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccat |
487 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
34506085 |
tgcaataaccaaacttagccagtatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggttaactggaagcttcaatctcacaagccat |
34505986 |
T |
|
| Q |
488 |
ttcaccctttttctccaaaaagatgctgtcattctcgcatctcaggtat |
536 |
Q |
| |
|
||||| |||||||||||||||| || |||||||| | ||||||||||| |
|
|
| T |
34505985 |
ttcactctttttctccaaaaaggcgcggtcattcttggatctcaggtat |
34505937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 34506254 - 34506189
Alignment:
| Q |
192 |
attgttttgtgcaggttatacgtgtgatctctgtagttgtgatattgggaacactcgcagaatgca |
257 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| ||||| ||||||| ||| |||| |||||||||| |
|
|
| T |
34506254 |
attgttttgtgcaggttatttgtgtgatttctatagttttgatatttggatcactagcagaatgca |
34506189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 11065196 - 11065136
Alignment:
| Q |
335 |
gattttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataa |
395 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||||| |
|
|
| T |
11065196 |
gattttggtggtgttggagatggaaaaacatcaaacacaaaggcttttaaatctgcaataa |
11065136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University