View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3206_low_7 (Length: 446)
Name: NF3206_low_7
Description: NF3206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3206_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 38940027 - 38939600
Alignment:
| Q |
1 |
aaacgaagtaatgatgatgaatgttaccgtagagattcatcatcatcaacaaggattcacggaaaacgaaaaggaaaatagcgataacgaatgttacctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38940027 |
aaacgaagtaatgatgatgaatgttaccgtagagattcatcatcatcaacaaggattcacggaaaacgaaaaggaaaatagcgataacgaatgttacctg |
38939928 |
T |
|
| Q |
101 |
aaaatcgctgaaagctgtaaccgtttttggatgagatgaagcaacggtgattgaaggaattctcgatgaatgttgaagaagtgggaacagagaactttat |
200 |
Q |
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| T |
38939927 |
aaaatcgctgaaagctgtaaccgtttttggatgagatgaagcaacggtgattgaaggaattctcgatgaatgttgaagaagtgggaacagagaactttat |
38939828 |
T |
|
| Q |
201 |
atatcccactggtgtaactacttcatcgagtttgttagagaatatgagctggcaccagccagtacaagcttcaacattcgcgagtatttttgattgaatc |
300 |
Q |
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| T |
38939827 |
atatcccactggtgtaactacttcatcgagtttgttagagaatatgagctggcaccagccagtacaagcttcaacattcgcgagtatttttgattgaatc |
38939728 |
T |
|
| Q |
301 |
ggagttggccttgtagtattattcattttgatttgtaagcataagattaaaattttcataaaatttatattataagatgtatgtgatttgatttaagtga |
400 |
Q |
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| T |
38939727 |
ggagttggccttgtagtattattcattttgaatagtaagcataagattaaaa-tttcataaaatttatattataagatgtatgtgatttgatttaagtga |
38939629 |
T |
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| Q |
401 |
aagaaggaagagatactgagggaaaaaac |
429 |
Q |
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| T |
38939628 |
aagaaggaagagatactgagggaaaaaac |
38939600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 55759653 - 55759865
Alignment:
| Q |
1 |
aaacgaagtaatgatgatgaatgttaccgtagagattcatcatcatcaacaaggattcacggaaaacgaaaaggaaaatagcgataacgaatgttacctg |
100 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| | |||||||||||| |||||||||| | |
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| T |
55759653 |
aaacgaaataatgatgatgaatgttaccgtaaagattcatcatcatcaataaggagtca-tgaaaacgaaaa-gcaaatagcgataatgaatgttaccag |
55759750 |
T |
|
| Q |
101 |
aaaatcgctgaaa--gctgtaaccgttt-ttggatgagatgaagcaacggtgattgaaggaattctcgatgaatgttgaagaagtgggaacagagaactt |
197 |
Q |
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|||| ||||| ||| |||||||| |||||||||| |||||| || ||||||| ||| |||||||||||||||||| |||||| |||||||| |
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| T |
55759751 |
aaaa----tgaaaacactgaaaccgtttcttggatgagagaaagcaa---tgcttgaagg-tttcacgatgaatgttgaagaagagggaactgagaactt |
55759842 |
T |
|
| Q |
198 |
tatatatcccactggtgtaacta |
220 |
Q |
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||||||||||||||||||||||| |
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| T |
55759843 |
tatatatcccactggtgtaacta |
55759865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 429
Target Start/End: Original strand, 55759952 - 55760046
Alignment:
| Q |
337 |
aagcataagattaaaattttcataaaatttata-ttataagatgtat--gtgatttgatttaagtgaaa-gaaggaagagatactgagggaaaaaac |
429 |
Q |
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||||||||||||||| |||||||||||| ||| ||||||||||||| ||||| |||||||||||||| ||||||||| ||| ||||||||||||| |
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| T |
55759952 |
aagcataagattaaa--tttcataaaattaatagttataagatgtatatgtgatatgatttaagtgaaaagaaggaagaaatattgagggaaaaaac |
55760046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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