View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3206_low_8 (Length: 430)

Name: NF3206_low_8
Description: NF3206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3206_low_8
NF3206_low_8
[»] chr2 (1 HSPs)
chr2 (10-392)||(9722616-9722998)
[»] chr8 (2 HSPs)
chr8 (18-249)||(38281566-38281797)
chr8 (27-247)||(39304489-39304709)
[»] chr4 (2 HSPs)
chr4 (17-246)||(56067885-56068114)
chr4 (99-157)||(56098849-56098907)
[»] chr3 (1 HSPs)
chr3 (13-253)||(23569680-23569920)
[»] chr5 (1 HSPs)
chr5 (33-250)||(41866542-41866759)
[»] chr7 (2 HSPs)
chr7 (159-265)||(22139957-22140063)
chr7 (159-265)||(40539347-40539453)
[»] chr1 (1 HSPs)
chr1 (76-280)||(39786251-39786455)


Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 10 - 392
Target Start/End: Original strand, 9722616 - 9722998
Alignment:
Q  10 gcagagagcaagacaggtttcttccaatagcaaacgtgagtaggatcatgaaaaaggctttaccagcaaacgcaaagatctcaaaagaagcaaaagaaac 109  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9722616 gcagagagcaagataggtttcttccaatagcaaacgtgagtaggatcatgaaaaaggctttaccagcaaacgcaaagatctcaaaagaagcaaaagaaac 9722715  T
Q  110 agtacaagagtgtgtatcagagtttatcagtttcataactggagaagcttctgataagtgtcagaaagagaagaggaaaacaatcaacggtgatgatctt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9722716 agtacaagagtgtgtatcagagtttatcagtttcataactggagaagcttctgataagtgtcagaaagagaagaggaaaacaatcaacggtgatgatctt 9722815  T
Q  210 ctttgggctatgacaactcttggatttgaagattatgttgagccactcaagatttatttgagtaagtatagagagatggaaggtgaaaagagtgctatga 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||    
T  9722816 ctttgggctatgacaactcttggatttgaagattatgttgagccactcaagatttatttgagtaagtatagggagatggaaggagagaagagtgctatga 9722915  T
Q  310 ttggtaggagtgatcaaagagatgggaatgttggtgaggatagtggtggagtttatggtcatggagttggagttccatcttct 392  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9722916 ttggtaggagtgatcagagagatgggaatgttggtgagggtagtggtggagtttatggtcatggagttggagttccatcttct 9722998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 38281566 - 38281797
Alignment:
Q  18 caagacaggtttcttccaatagcaaacgtgagtaggatcatgaaaaaggctttaccagcaaacgcaaagatctcaaaagaagcaaaagaaacagtacaag 117  Q
    ||||||||||| || ||||| || ||||||||  | || |||||||  ||  | |||||||| || || ||||||||||||||||||||||| || ||||    
T  38281566 caagacaggttcctaccaattgctaacgtgagccgtataatgaaaagagcacttccagcaaatgctaaaatctcaaaagaagcaaaagaaacggttcaag 38281665  T
Q  118 agtgtgtatcagagtttatcagtttcataactggagaagcttctgataagtgtcagaaagagaagaggaaaacaatcaacggtgatgatcttctttgggc 217  Q
    | ||||| || ||||| || |||||||| ||||| |||||||||||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||    
T  38281666 aatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaattaatggtgatgatcttctttgggc 38281765  T
Q  218 tatgacaactcttggatttgaagattatgttg 249  Q
    ||||||||| ||||| |||||| | |||||||    
T  38281766 tatgacaacacttggttttgaaaactatgttg 38281797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 247
Target Start/End: Original strand, 39304489 - 39304709
Alignment:
Q  27 tttcttccaatagcaaacgtgagtaggatcatgaaaaaggctttaccagcaaacgcaaagatctcaaaagaagcaaaagaaacagtacaagagtgtgtat 126  Q
    |||||||| |||||||| ||  |||| || |||||||| | | | || ||||| | ||| |||||||| || |||||||| ||||| ||||| ||||| |    
T  39304489 tttcttcctatagcaaatgttggtagaataatgaaaaaagttattcctgcaaatggaaaaatctcaaaggatgcaaaagagacagttcaagaatgtgtgt 39304588  T
Q  127 cagagtttatcagtttcataactggagaagcttctgataagtgtcagaaagagaagaggaaaacaatcaacggtgatgatcttctttgggctatgacaac 226  Q
    | ||||| || |||||  | || || ||||| || ||||| ||||| | ||| || || || |||||||||||||||||| || |||||||||| |||||    
T  39304589 cggagttcataagttttgtcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaatcaacggtgatgatattatttgggctattacaac 39304688  T
Q  227 tcttggatttgaagattatgt 247  Q
      | || |||||||| |||||    
T  39304689 gttaggctttgaagaatatgt 39304709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 56067885 - 56068114
Alignment:
Q  17 gcaagacaggtttcttccaatagcaaacgtgagtaggatcatgaaaaaggctttaccagcaaacgcaaagatctcaaaagaagcaaaagaaacagtacaa 116  Q
    |||||| ||| ||||||| |||||||||||| ||||||||||||| || || |||||  | |  |||||||| || |||||||| ||||||||  | |||    
T  56067885 gcaagaaaggcttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccgacgagagcaaagatatcgaaagaagctaaagaaacgatgcaa 56067984  T
Q  117 gagtgtgtatcagagtttatcagtttcataactggagaagcttctgataagtgtcagaaagagaagaggaaaacaatcaacggtgatgatcttctttggg 216  Q
    ||||||||||||||||| || || |||||||| || ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||| | ||||    
T  56067985 gagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgatcttgtgtggg 56068084  T
Q  217 ctatgacaactcttggatttgaagattatg 246  Q
    | ||||| || ||||| |||||||| ||||    
T  56068085 ccatgactacacttggctttgaagaatatg 56068114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 56098849 - 56098907
Alignment:
Q  99 gcaaaagaaacagtacaagagtgtgtatcagagtttatcagtttcataactggagaagc 157  Q
    |||||||||||| | ||||||||||| || ||||  ||||| |||||||||||||||||    
T  56098849 gcaaaagaaacaatccaagagtgtgtgtctgagtacatcagcttcataactggagaagc 56098907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 23569680 - 23569920
Alignment:
Q  13 gagagcaagacaggtttcttccaatagcaaacgtgagtaggatcatgaaaaaggctttaccagcaaacgcaaagatctcaaaagaagcaaaagaaacagt 112  Q
    |||| |||||| | |||||||||||||||||||| || |||||||||||||| ||  ||||||| ||||| |||||||||||||| ||||| ||||||||    
T  23569680 gagaacaagaccgatttcttccaatagcaaacgtaagcaggatcatgaaaaaagcactaccagcgaacgcgaagatctcaaaagacgcaaaggaaacagt 23569779  T
Q  113 acaagagtgtgtatcagagtttatcagtttcataactggagaagcttctgataagtgtcagaaagagaagaggaaaacaatcaacggtgatgatcttctt 212  Q
     ||||||||||| |||||||| ||||| ||||| || || ||||| || |||||||||||    |||||| |||| || |||||||| |||||| | |||    
T  23569780 tcaagagtgtgtttcagagttcatcagcttcatcaccggcgaagcctccgataagtgtcaacgtgagaagcggaagacgatcaacggcgatgatttgctt 23569879  T
Q  213 tgggctatgacaactcttggatttgaagattatgttgagcc 253  Q
    ||||| ||||| ||  | ||||| || || |||||||||||    
T  23569880 tgggcgatgacgacgttgggattcgaggagtatgttgagcc 23569920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 250
Target Start/End: Original strand, 41866542 - 41866759
Alignment:
Q  33 ccaatagcaaacgtgagtaggatcatgaaaaaggctttaccagcaaacgcaaagatctcaaaagaagcaaaagaaacagtacaagagtgtgtatcagagt 132  Q
    ||||||||||||||||| || || ||||| ||||| |||||||||||||| |||||||| ||||| || || ||||| || || || |||||||| ||||    
T  41866542 ccaatagcaaacgtgagcagaataatgaagaaggcgttaccagcaaacgcgaagatctcgaaagatgctaaggaaacggtgcaggaatgtgtatcggagt 41866641  T
Q  133 ttatcagtttcataactggagaagcttctgataagtgtcagaaagagaagaggaaaacaatcaacggtgatgatcttctttgggctatgacaactcttgg 232  Q
    | ||||| ||||| || || |||||||| ||||||||||||| ||||||  | || || |||||||| || ||||| |||||||| ||||| ||  | ||    
T  41866642 tcatcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacgatcaacggcgacgatctactttgggcgatgactacgttagg 41866741  T
Q  233 atttgaagattatgttga 250  Q
    ||||||||| || |||||    
T  41866742 atttgaagagtacgttga 41866759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 22139957 - 22140063
Alignment:
Q  159 tctgataagtgtcagaaagagaagaggaaaacaatcaacggtgatgatcttctttgggctatgacaactcttggatttgaagattatgttgagccactca 258  Q
    |||||||||||||||| |||||||||||| || || |||||||||||| | |||||||| ||| | ||| | || ||||| |||||| |||| || || |    
T  22139957 tctgataagtgtcagagagagaagaggaagacgattaacggtgatgatttgctttgggcgatggctactttagggtttgaggattatattgatcctctta 22140056  T
Q  259 agattta 265  Q
    |||||||    
T  22140057 agattta 22140063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 40539347 - 40539453
Alignment:
Q  159 tctgataagtgtcagaaagagaagaggaaaacaatcaacggtgatgatcttctttgggctatgacaactcttggatttgaagattatgttgagccactca 258  Q
    |||||||||||||||| |||||||||||| || || |||||||||||| | |||||||| ||| | ||| | || ||||| |||||| |||| || || |    
T  40539347 tctgataagtgtcagagagagaagaggaagacgattaacggtgatgatttgctttgggcgatggctactttagggtttgaggattatattgatcctctta 40539446  T
Q  259 agattta 265  Q
    |||||||    
T  40539447 agattta 40539453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 280
Target Start/End: Complemental strand, 39786455 - 39786251
Alignment:
Q  76 caaacgcaaagatctcaaaagaagcaaaagaaacagtacaagagtgtgtatcagagtttatcagtttcataactggagaagcttctgataagtgtcagaa 175  Q
    |||| ||||| ||||| ||||| || ||||||||  | ||||||||||| ||||||||| | |||||  ||||||| ||||| ||||| |||||||| ||    
T  39786455 caaatgcaaaaatctcgaaagatgctaaagaaaccatgcaagagtgtgtctcagagtttgttagttttgtaactggtgaagcatctgacaagtgtcacaa 39786356  T
Q  176 agagaagaggaaaacaatcaacggtgatgatcttctttgggctatgacaactcttggatttgaagattatgttgagccactcaagatttatttgagtaag 275  Q
     |||||| | || ||| | || ||||||||| ||  ||||||| ||   || || || ||||| ||||| | |||||||||||| |  ||||||  ||||    
T  39786355 ggagaagcgcaagacagtgaatggtgatgatgtttgttgggctttggggacactagggtttgatgattacgctgagccactcaaaaggtatttgtataag 39786256  T
Q  276 tatag 280  Q
    |||||    
T  39786255 tatag 39786251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University