View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3206_low_9 (Length: 430)
Name: NF3206_low_9
Description: NF3206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3206_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 184 - 420
Target Start/End: Complemental strand, 26804048 - 26803812
Alignment:
| Q |
184 |
tgatagtttaatttattataggtttataaaaactaaactcatattttaatacaaattcatatgtaccctttttgatacttagtgcaattttgttttatct |
283 |
Q |
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| T |
26804048 |
tgatagtttaatttattataggtttataaaaactaaactcatattttaatacaaattcataggtaccctttttgatatttagtgcaattttgttttatct |
26803949 |
T |
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| Q |
284 |
taaagcaacaagtgttaactttaatgtctcttttgataaacagatcctatctatattgcttatcatgatgaagaatggggagttccagttcatgatgaca |
383 |
Q |
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| T |
26803948 |
taaagcaacaagtgttaactttaatgtctcttttgataaacagatcctatctatattgcttatcatgatgaagaatggggagttccagttcatgatgaca |
26803849 |
T |
|
| Q |
384 |
agtaagtccctacccctctctctctcacacacctatg |
420 |
Q |
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| T |
26803848 |
agtaagtccctacccctctctctctcacacacctatg |
26803812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 26804270 - 26804105
Alignment:
| Q |
18 |
ccttcaagtgctcttgattcaaagactactaatcaagaggagaagagatgcagcttcatcacaaccaattcaggtaattggtagttataaatattttaaa |
117 |
Q |
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| T |
26804270 |
ccttcaagtgctcttgattcaaagactactaatcaagaggagaagagatgcagcttcatcacaaccaattcaggtaattggtagttataaatattttaaa |
26804171 |
T |
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| Q |
118 |
agatttataattctaaaagaaaattattagaaagtcaatcaattataattgtctgaatattaaaaatg |
185 |
Q |
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| T |
26804170 |
agatt--taattctaaaagaaaattattagaaagtcaatcaattataattgtctgaatattaaaaatg |
26804105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 308 - 390
Target Start/End: Complemental strand, 18417082 - 18416999
Alignment:
| Q |
308 |
tgtctcttttgat-aaacagatcctatctatattgcttatcatgatgaagaatggggagttccagttcatgatgacaagtaagt |
390 |
Q |
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|||||||||| || ||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18417082 |
tgtctctttttattaaatagatcccatctatattgcttatcatgatgaggaatggggagttccagttcatgatgacaagtaagt |
18416999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 387
Target Start/End: Complemental strand, 54546851 - 54546811
Alignment:
| Q |
347 |
catgatgaagaatggggagttccagttcatgatgacaagta |
387 |
Q |
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| T |
54546851 |
catgatgaagaatggggagttccagtacatgacgacaagta |
54546811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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