View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3208_high_12 (Length: 331)

Name: NF3208_high_12
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3208_high_12
NF3208_high_12
[»] chr1 (1 HSPs)
chr1 (23-316)||(27960121-27960413)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 23 - 316
Target Start/End: Complemental strand, 27960413 - 27960121
Alignment:
Q  23 cagagagtagaaaatttagagagagataggtggaaataatggaattatcagaagtctggttaaagtcaaattctcctagaaaaactcatactcttgctgg 122  Q
    |||||||||||||| |||||||||||||||||||| || |||| |||||||||||||  ||||||||||| ||||| |||| ||||||||||||||||||    
T  27960413 cagagagtagaaaacttagagagagataggtggaagtagtggagttatcagaagtctaattaaagtcaaactctcccagaagaactcatactcttgctgg 27960314  T
Q  123 aaaggaaaagtcannnnnnngcaagtttcttgcttgcaataggcctgcattccatttcgccggaaaacatgtcgtggactataatcaaactatgctactt 222  Q
    |||||||||||||       | || || ||||||| ||||||| |||||||||||||   | |||||||||| |||||||||||||||||||||||||||    
T  27960313 aaaggaaaagtcatttttt-gaaacttccttgcttccaataggtctgcattccattttaacagaaaacatgtggtggactataatcaaactatgctactt 27960215  T
Q  223 gttcaaagtgatttatagtaaggtgattgaccttgagaaatttctaggtttgcaaggagaaatgttactcagtgtgagcttgagacgtattttc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||    
T  27960214 gttcaaagtgatttatagtaaggtgattgaccttgagaaatttctaggtttgcaaagagaagtgttacttagtgtgagcttgagatgtattttc 27960121  T

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