View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3208_high_14 (Length: 323)
Name: NF3208_high_14
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3208_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 7905582 - 7905675
Alignment:
| Q |
116 |
tcaaacttgataatgagagctccagtcttcttggagaagagagctttaaattgccaaagatttcactaacttccacagatggatctaatgtttg |
209 |
Q |
| |
|
|||| |||||| | ||||||| || ||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7905582 |
tcaagcttgatgaagagagcttcaatcttcttggagaagaaatctttaaattgccaaagatttcactaacttccatagatggatctaatgtttg |
7905675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 7778902 - 7778796
Alignment:
| Q |
90 |
cactctctttggtctccatgtataagtcaaacttgataatgagagctccagtcttcttggagaagagagctttaaattgccaaagatttcactaacttcc |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| | | |||||||| ||||||||| |||||| ||| |||||||||| |
|
|
| T |
7778902 |
cactctctttggtctccatgtataagtcaagcttga-------------agtcttttcgaagaagagaactttaaattaccaaaggttttactaacttcc |
7778816 |
T |
|
| Q |
190 |
acagatggatctaatgtttg |
209 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
7778815 |
atagatggatctaatgtttg |
7778796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 7816619 - 7816556
Alignment:
| Q |
146 |
ttggagaagagagctttaaattgccaaagatttcactaacttccacagatggatctaatgtttg |
209 |
Q |
| |
|
||||||||| || |||||||||||||||| ||| ||||||||||| | |||||||||||||||| |
|
|
| T |
7816619 |
ttggagaagggaactttaaattgccaaaggttttactaacttccataaatggatctaatgtttg |
7816556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 7879533 - 7879589
Alignment:
| Q |
24 |
aatattgctacaattacaacttaaagtcttaacgctagactttattccatgaataaa |
80 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
7879533 |
aatagtgctacaattgcaacttatagtcttaacactagactttattcaatgaataaa |
7879589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University