View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3208_high_15 (Length: 301)
Name: NF3208_high_15
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3208_high_15 |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 38213640 - 38213946
Alignment:
| Q |
1 |
gggtatatatagtgttctcaatataccgaaaactgataaggaagtgatacaaactacaaagaatttgatttatttgatcacgtgttatctaagatagaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
38213640 |
gggtatatatagtgttctcaatataccgaaaactgataaggaagtggtacaaactacaaagaatgtgatttatttgatcacatgttatctaagatagaca |
38213739 |
T |
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| Q |
101 |
ccaaaata-tatagaggaatatataaaataaaagaatcataacaaattaa-----gatggctattatatgttcttcatcattgatctctcatcagaacct |
194 |
Q |
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| T |
38213740 |
ccaaaaaaatatagaggaatatataaaatcaaagaatcataacaaattaaaataagatggctattatatgttcttcatcattgatctctcatcagaacct |
38213839 |
T |
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| Q |
195 |
tggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgcagtaattatatatcataaagtctttctgcacctatctcaattttctt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| |||||||| ||||| |
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| T |
38213840 |
tggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgcagtaattatagatcataaagtatttctgaacccatctcaatcttctt |
38213939 |
T |
|
| Q |
295 |
ctaccat |
301 |
Q |
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||||||| |
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| T |
38213940 |
ctaccat |
38213946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 55 - 301
Target Start/End: Original strand, 38217913 - 38218165
Alignment:
| Q |
55 |
tacaaagaatttgatttatttgatcacgtgttatctaagatagacaccaaaata-tatagaggaatatataaaataaaagaatcataacaaattaa---- |
149 |
Q |
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| T |
38217913 |
tacaaagaatttgatttatttgatcatgtgctatctaaaatagacaccaaaaaaatatagaggaatatataaaatcaaagaatcataacaaattaaaata |
38218012 |
T |
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| Q |
150 |
-gatggctattatatgttcttcatcattgatctctcatcagaaccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgca |
248 |
Q |
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| T |
38218013 |
agatggctattatatgttcttcatcattgatctctcatcagaaccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgca |
38218112 |
T |
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| Q |
249 |
gtaattatatatcataaagtctttctgcacctatctcaattttcttctaccat |
301 |
Q |
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| T |
38218113 |
gtaattatagatcataaagtatttctgaacccatctcaatcttcttctaccat |
38218165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 42991666 - 42991557
Alignment:
| Q |
192 |
ccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgcagtaattatatatcataaagtctttctgcacctatctcaatttt |
291 |
Q |
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||||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || | ||||| ||| |||||||| || |
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| T |
42991666 |
ccttgaacgcctacactcagcaggaataccttgtggaaatcgcttaagatcgttgcagtaattatatatcatgaaatacttctgaacccatctcaatctt |
42991567 |
T |
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| Q |
292 |
cttctaccat |
301 |
Q |
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|||||||||| |
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| T |
42991566 |
cttctaccat |
42991557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 42993697 - 42993602
Alignment:
| Q |
55 |
tacaaagaatttgatttatttgatcacgtgttatctaagatagacacc-aaaatatatagaggaatatataaaataaaagaatcataacaaattaa |
149 |
Q |
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||||||||||||||||||||| |||| |||||| ||| | ||||||| |||| ||| ||||||| ||| |||| |||||||||||| ||||||| |
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| T |
42993697 |
tacaaagaatttgatttatttcatcatctgttatataaaacagacaccaaaaaaatacagaggaagatagtaaatcaaagaatcataataaattaa |
42993602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 301
Target Start/End: Complemental strand, 35018348 - 35018250
Alignment:
| Q |
203 |
tacactcagcaggaataccttctgggaatcgcttaagatcgttgcagtaattatatatcataaagtctttctgcacctatctcaattttcttctaccat |
301 |
Q |
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|||||||| |||||| ||||| |||||||||||||||||| || || || ||||| ||||| || | || || ||| |||||||| |||||||||||| |
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| T |
35018348 |
tacactcaacaggaacaccttgtgggaatcgcttaagatcattacaatagttataaatcatgaaatacttttgaacccatctcaatcttcttctaccat |
35018250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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