View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3208_high_28 (Length: 225)
Name: NF3208_high_28
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3208_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 50387394 - 50387584
Alignment:
| Q |
19 |
atcagagtcagtatatccaatgttctgaagctgatctaacctctgatatgcgagaatgtagtcttttgttctctttaaatattgcatgacttatttcgtt |
118 |
Q |
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| T |
50387394 |
atcagagtcagtatatccaatgttctgaagctgatctaacctctgatatgcgagaatgtagtcttttgttctctttaaatattgcatgacttatttcgtt |
50387493 |
T |
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| Q |
119 |
gctttctgatgctctaatcatggattgctcaaatacatgtccaacatcccgtacattatatctagacgcatacaaacttgtgcatacatta |
209 |
Q |
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| T |
50387494 |
gctttctgatgctctaatcatggattgctcaaatacatgtccaacatcccgtacattatatctagacacatacaaacttgtgcatacatta |
50387584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 29242547 - 29242652
Alignment:
| Q |
50 |
tgatctaacctctgatat-gcgagaatgtagtcttttgttctctttaaatattgcatgacttatttcgttgctttctgatgctctaatcatggattgctc |
148 |
Q |
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|||||||||||| ||||| | ||| ||||||||||||||||||||||| || |||||||| |||| ||||||||| |||| ||||||| || ||| ||| |
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| T |
29242547 |
tgatctaacctccgatattgtgagcatgtagtcttttgttctctttaagtactgcatgacccatttggttgctttccgatggtctaatcctgaattactc |
29242646 |
T |
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| Q |
149 |
aaatac |
154 |
Q |
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|||||| |
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| T |
29242647 |
aaatac |
29242652 |
T |
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