View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3208_high_30 (Length: 209)
Name: NF3208_high_30
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3208_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 8552756 - 8552937
Alignment:
| Q |
16 |
aatttgactcgttggaatcaaatcgtctaattcgttctaatcaatgttcaagtggttgtgggttggaggaaattaaagcgt-gatcatctgattttgagt |
114 |
Q |
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| T |
8552756 |
aatttggctcgttggaatcaaatcgtctaattc----taatcaatgttcaagtggttgtgggttggaggaaattaaagcgtcgatcatctgattttgagt |
8552851 |
T |
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| Q |
115 |
tgttcattttatagaagtattt--ggtcatttgttcgataattattaggtattcattcaacgagttctttgcatttttcttatcac |
198 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8552852 |
tgttcattttatagaagtatttttgttcatttgttcgataattattaggtattcattcaacgagttctttgcatctttcttatcac |
8552937 |
T |
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