View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3208_high_8 (Length: 415)
Name: NF3208_high_8
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3208_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 10 - 396
Target Start/End: Original strand, 39350544 - 39350927
Alignment:
| Q |
10 |
catcatcaaagaataaatgaaggaattgttgagttatatagtaattgactagtactcactannnnnnngtaggtaacactggagaagtccaaattaatgc |
109 |
Q |
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| T |
39350544 |
catcatcaaagaataaatgaaggaattgttgagttatata---attgactagtactcactatttttttgtaggtaacactggagaagtccaaattaatgc |
39350640 |
T |
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| Q |
110 |
taaccaatatcttaaacttcctatctgaatcaactttggcccaaccaaagtaaatcccaacaacttgatcaggaatagcaaatgttgcattctctagatt |
209 |
Q |
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| T |
39350641 |
taaccaatatcttaaacttcctatctgaatcaactttggcccaaccaaagtaaatcccaacaacttgatcaggaatagcaaatgttgcattctctagatt |
39350740 |
T |
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| Q |
210 |
cagaaattcaattttgtcagattgatagtaccatgttaaacttttaaaaaatgaaatttaaagagatcaaacacagtgttttaaaaaccaaacaggatgg |
309 |
Q |
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| T |
39350741 |
cagaaattcaattttgtcagattgataataccatgttaaacttttaaaaaatgaaatttaaagagatcaaacacagtgttttaaaaaccaaacaggacgg |
39350840 |
T |
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| Q |
310 |
ttcaatgggttaaaccttgaaccagaatttattacagttcagttattttgatggttctatcgcagtttcgtccagtacgaacagttt |
396 |
Q |
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| T |
39350841 |
ttcaaccggttaaaccttgaaccagaatttattacagttcagttattttgatggttctgtcgcagtttcgtccagtacgaacagttt |
39350927 |
T |
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