View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3208_high_9 (Length: 386)
Name: NF3208_high_9
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3208_high_9 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 153 - 369
Target Start/End: Complemental strand, 11696247 - 11696031
Alignment:
| Q |
153 |
gaagtaaagaacataaccaaccaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagaga |
252 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11696247 |
gaagtaaggaacataaccaaccaatatatagatgagagaagcaagcatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagaga |
11696148 |
T |
|
| Q |
253 |
ggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattccctt |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696147 |
ggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattccctt |
11696048 |
T |
|
| Q |
353 |
gaattccataatatgat |
369 |
Q |
| |
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||||||||||||||||| |
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| T |
11696047 |
gaattccataatatgat |
11696031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 178 - 369
Target Start/End: Complemental strand, 11798063 - 11797872
Alignment:
| Q |
178 |
atatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagccc |
277 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11798063 |
atatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccaaccc |
11797964 |
T |
|
| Q |
278 |
aaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgat |
369 |
Q |
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| T |
11797963 |
aaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgat |
11797872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 172 - 369
Target Start/End: Complemental strand, 11676132 - 11675935
Alignment:
| Q |
172 |
accaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttc |
271 |
Q |
| |
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||||| ||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |
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| T |
11676132 |
accaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactc |
11676033 |
T |
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| Q |
272 |
cagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgat |
369 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
11676032 |
cagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgat |
11675935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 172 - 369
Target Start/End: Complemental strand, 11684411 - 11684214
Alignment:
| Q |
172 |
accaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttc |
271 |
Q |
| |
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||||| ||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |
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| T |
11684411 |
accaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactc |
11684312 |
T |
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| Q |
272 |
cagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgat |
369 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
11684311 |
cagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgat |
11684214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 172 - 369
Target Start/End: Complemental strand, 11702025 - 11701828
Alignment:
| Q |
172 |
accaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttc |
271 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |
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| T |
11702025 |
accaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagctgttc |
11701926 |
T |
|
| Q |
272 |
cagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgat |
369 |
Q |
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||||||||| ||| ||||| | ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11701925 |
cagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataatatgat |
11701828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 154 - 344
Target Start/End: Complemental strand, 11779225 - 11779035
Alignment:
| Q |
154 |
aagtaaagaacataaccaaccaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagag |
253 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||| ||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||||||||| |
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| T |
11779225 |
aagtgaagaacagaaccaaccaatacatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaatgaatgcaccaaagagag |
11779126 |
T |
|
| Q |
254 |
gaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaa |
344 |
Q |
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|||| |||||||||||||||||||||| ||||||||| | |||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11779125 |
gaaggagagaagcagttccagcccaaacattcacattcttagcagcagttgcagtgctttgtttgagtggccctgttagatatgatatcaa |
11779035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 154 - 344
Target Start/End: Complemental strand, 16688 - 16498
Alignment:
| Q |
154 |
aagtaaagaacataaccaaccaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagag |
253 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| | || |||||||||||||||||||||| ||||||||| ||||||| |
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| T |
16688 |
aagtgaagaacagaaccaaccaatatatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaacgaaagcacctaagagag |
16589 |
T |
|
| Q |
254 |
gaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaa |
344 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16588 |
gaagtagagaagcagttccagcccaaatattcacattcttagcagctgttgcagtgctttgtttgagtggtcctgttagatatgatatcaa |
16498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 6627 - 6675
Alignment:
| Q |
199 |
atgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaa |
247 |
Q |
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||||| ||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
6627 |
atgatggtgcggtaacggccaagaaaagaatcagcaagaaaagcaccaa |
6675 |
T |
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