View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3208_low_10 (Length: 332)
Name: NF3208_low_10
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3208_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 31841609 - 31841464
Alignment:
| Q |
19 |
gaaaaaatatagtaattgaaacacggataatgcttaactttacgaaatattgagagaagaaacgcacgacacatattttatctgttgatttctatgccaa |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
31841609 |
gaaaaaatatcgtaattgaaacacggataatgcttaactttacgaaatattgagagaagaaacgcaccacacatattttatccgttgatttctatgc--- |
31841513 |
T |
|
| Q |
119 |
caaggcaacaaccacatgtgatttgtgccaaaggagcaacttaaactttttatt |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31841512 |
-----taacaaccacatgtgatttgtgccaaaggagcaacttaaactttttatt |
31841464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 31841577 - 31841496
Alignment:
| Q |
173 |
cttaactttacaaaatatttgagagaagaaactcacgacacatattttatccgttgatttatatgccaacaaccacatgtgat |
255 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
31841577 |
cttaactttacgaaatatt-gagagaagaaacgcaccacacatattttatccgttgatttctatgctaacaaccacatgtgat |
31841496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 31841458 - 31841384
Alignment:
| Q |
249 |
atgtgatattcttgcattttttgttgtgtattttcg-------taatactgctcttgaaacacacatgagacatg |
316 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
31841458 |
atgtgatattcttgcatttcttgctgtgtattttcgtaaggaataacactgctcttgaaacacacatgagacatg |
31841384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University