View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3208_low_11 (Length: 331)

Name: NF3208_low_11
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3208_low_11
NF3208_low_11
[»] scaffold0508 (1 HSPs)
scaffold0508 (32-251)||(11737-11944)
[»] chr1 (7 HSPs)
chr1 (32-157)||(24339971-24340096)
chr1 (32-171)||(24309720-24309859)
chr1 (37-141)||(24415410-24415514)
chr1 (34-100)||(24322076-24322142)
chr1 (34-134)||(24366735-24366835)
chr1 (250-284)||(4325453-4325487)
chr1 (251-284)||(41871386-41871419)
[»] chr8 (10 HSPs)
chr8 (251-315)||(12350855-12350919)
chr8 (32-98)||(15348478-15348544)
chr8 (19-98)||(12199923-12200002)
chr8 (19-98)||(12444351-12444430)
chr8 (19-98)||(12194917-12194996)
chr8 (19-98)||(12439345-12439424)
chr8 (249-284)||(24471875-24471910)
chr8 (251-284)||(5769490-5769523)
chr8 (251-284)||(11071961-11071994)
chr8 (251-284)||(31379394-31379427)
[»] chr4 (30 HSPs)
chr4 (19-98)||(7907941-7908020)
chr4 (33-133)||(45366618-45366718)
chr4 (40-124)||(45385191-45385275)
chr4 (33-100)||(48862855-48862922)
chr4 (19-100)||(45372440-45372521)
chr4 (34-98)||(48735713-48735777)
chr4 (19-98)||(48891025-48891104)
chr4 (19-86)||(49041521-49041588)
chr4 (32-98)||(7771020-7771086)
chr4 (19-92)||(7774212-7774285)
chr4 (19-98)||(7822585-7822664)
chr4 (19-86)||(7877348-7877415)
chr4 (19-86)||(7904660-7904727)
chr4 (34-97)||(48156825-48156888)
chr4 (19-94)||(48870162-48870237)
chr4 (19-94)||(48885848-48885923)
chr4 (32-86)||(7238116-7238170)
chr4 (33-95)||(33134223-33134285)
chr4 (33-99)||(48148082-48148148)
chr4 (34-98)||(7789705-7789769)
chr4 (19-98)||(7813096-7813175)
chr4 (33-98)||(48170986-48171051)
chr4 (32-97)||(48902567-48902632)
chr4 (26-98)||(7800253-7800325)
chr4 (33-100)||(33133651-33133718)
chr4 (250-284)||(8371079-8371113)
chr4 (250-284)||(23143186-23143220)
chr4 (250-284)||(34708177-34708211)
chr4 (251-284)||(28024141-28024174)
chr4 (21-86)||(48875474-48875539)
[»] chr5 (8 HSPs)
chr5 (33-96)||(29712866-29712929)
chr5 (37-109)||(29695757-29695829)
chr5 (33-96)||(42562728-42562791)
chr5 (34-123)||(178610-178699)
chr5 (251-284)||(9259129-9259162)
chr5 (34-98)||(1812041-1812105)
chr5 (248-284)||(16526303-16526339)
chr5 (248-284)||(34457599-34457635)
[»] chr3 (6 HSPs)
chr3 (32-98)||(11024933-11024999)
chr3 (32-98)||(11015921-11015987)
chr3 (19-134)||(11006345-11006460)
chr3 (32-107)||(47452303-47452378)
chr3 (251-284)||(25437289-25437322)
chr3 (248-284)||(20370355-20370391)
[»] scaffold1234 (1 HSPs)
scaffold1234 (248-284)||(1050-1086)
[»] chr7 (3 HSPs)
chr7 (249-284)||(11001322-11001357)
chr7 (250-284)||(15494151-15494185)
chr7 (248-284)||(40969087-40969123)
[»] chr6 (2 HSPs)
chr6 (243-284)||(12597257-12597298)
chr6 (33-98)||(21015392-21015457)
[»] scaffold0031 (1 HSPs)
scaffold0031 (248-284)||(46470-46506)


Alignment Details
Target: scaffold0508 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 32 - 251
Target Start/End: Complemental strand, 11944 - 11737
Alignment:
Q  32 cagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaaccttactaagattttggtgatcaattcatcaggaag 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11944 cagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaatcggtaaccttactaagattttggtgatcaattcatcaggaag 11845  T
Q  132 atatggtggtgcatccacctccgccacctccgccatgcgtcttcctctgatgtttgctttgatttagggtttatgtataaagaaactcggtgaagagatg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||    
T  11844 atatggtggtgcatccacctccgccacctccgccatgcgtcttc------------ctttgatttagggtttatgtataaagaaactcggtgaagagatg 11757  T
Q  232 gtagacgacggttatgaaaa 251  Q
    ||||||||||||||||||||    
T  11756 gtagacgacggttatgaaaa 11737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 32 - 157
Target Start/End: Complemental strand, 24340096 - 24339971
Alignment:
Q  32 cagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaaccttactaagattttggtgatcaattcatcaggaag 131  Q
    |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24340096 cagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagacttaaccggtaaccttactaagattttggtgatcaattcatcaggaag 24339997  T
Q  132 atatggtggtgcatccacctccgcca 157  Q
    ||||||||||||||||||||||||||    
T  24339996 atatggtggtgcatccacctccgcca 24339971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 32 - 171
Target Start/End: Complemental strand, 24309859 - 24309720
Alignment:
Q  32 cagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaaccttactaagattttggtgatcaattcatcaggaag 131  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  24309859 cagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaatcttactaagattttggtgatcaattcatcaggcag 24309760  T
Q  132 atatggtggtgcatccacctccgccacctccgccatgcgt 171  Q
    ||||||||||  |||| | || ||| || |||||||||||    
T  24309759 atatggtggttgatccgcatctgcctccgccgccatgcgt 24309720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 24415514 - 24415410
Alignment:
Q  37 ataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaaccttactaagattttggtgatcaattcatcaggaagatatg 136  Q
    |||||||||||||| ||||||| |||| |||||||||| |||||||||||||||||||| || | || ||||| |||||||||||||||||| |||||||    
T  24415514 ataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaatctcaataggatttgggtgatcaattcatcaggcagatatg 24415415  T
Q  137 gtggt 141  Q
    |||||    
T  24415414 gtggt 24415410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 24322142 - 24322076
Alignment:
Q  34 gagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacctta 100  Q
    ||||||||||||||||| |||||||||||| |||||||||| ||||||||||| ||| | |||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaacctta 24322076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 24366835 - 24366735
Alignment:
Q  34 gagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaaccttactaagattttggtgatcaattcatcaggaagat 133  Q
    ||||||||||||||||||||||| |||||  |||||||||| || ||||  | ||| |||||||| |  | ||||| ||| |||||||||||||||||||    
T  24366835 gagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagagtttcaactggtaacctcagcaggatttgggtaatcaattcatcaggaagat 24366736  T
Q  134 a 134  Q
    |    
T  24366735 a 24366735  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 284
Target Start/End: Original strand, 4325453 - 4325487
Alignment:
Q  250 aactagaccttacacccgtgctgccgcacgggtca 284  Q
    ||||||||||| |||||||||||||||||||||||    
T  4325453 aactagaccttgcacccgtgctgccgcacgggtca 4325487  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 41871419 - 41871386
Alignment:
Q  251 actagaccttacacccgtgctgccgcacgggtca 284  Q
    |||||||||| |||||||||||||||||||||||    
T  41871419 actagaccttgcacccgtgctgccgcacgggtca 41871386  T

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Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 12350919 - 12350855
Alignment:
Q  251 actagaccttacacccgtgctgccgcacgggtcaaacaaaaattgcctttttgtttgattcttat 315  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12350919 actagaccttacaccggtgctgccgcacgggtcaaacaaaaattgcctttttgtttgattcttat 12350855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 15348544 - 15348478
Alignment:
Q  32 cagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    ||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| |||||||||||    
T  15348544 cagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaacct 15348478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 12200002 - 12199923
Alignment:
Q  19 gcaaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    ||||| || ||| |||||||||||||||||||||||||||||||  |||||||||  | ||||||||| ||||| |||||    
T  12200002 gcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacct 12199923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 12444430 - 12444351
Alignment:
Q  19 gcaaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    ||||| || ||| |||||||||||||||||||||||||||||||  |||||||||  | ||||||||| ||||| |||||    
T  12444430 gcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacct 12444351  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 12194996 - 12194917
Alignment:
Q  19 gcaaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    ||||| || ||| ||||||||||||| |||||||||||||||| | |||||||||  | ||||||||| ||||| |||||    
T  12194996 gcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacct 12194917  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 12439424 - 12439345
Alignment:
Q  19 gcaaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    ||||| || ||| ||||||||||||| |||||||||||||||| | |||||||||  | ||||||||| ||||| |||||    
T  12439424 gcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacct 12439345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 284
Target Start/End: Complemental strand, 24471910 - 24471875
Alignment:
Q  249 aaactagaccttacacccgtgctgccgcacgggtca 284  Q
    |||||||||||| |||||||||||||||||||||||    
T  24471910 aaactagaccttgcacccgtgctgccgcacgggtca 24471875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 5769490 - 5769523
Alignment:
Q  251 actagaccttacacccgtgctgccgcacgggtca 284  Q
    |||||||||| |||||||||||||||||||||||    
T  5769490 actagaccttgcacccgtgctgccgcacgggtca 5769523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 11071961 - 11071994
Alignment:
Q  251 actagaccttacacccgtgctgccgcacgggtca 284  Q
    |||||||||| |||||||||||||||||||||||    
T  11071961 actagaccttgcacccgtgctgccgcacgggtca 11071994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 31379427 - 31379394
Alignment:
Q  251 actagaccttacacccgtgctgccgcacgggtca 284  Q
    |||||||||| |||||||||||||||||||||||    
T  31379427 actagaccttgcacccgtgctgccgcacgggtca 31379394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 7908020 - 7907941
Alignment:
Q  19 gcaaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    |||||||||||||||||||||||||||||||||||||||| ||| || ||||||||  |||||||||| ||||| |||||    
T  7908020 gcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacct 7907941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 45366618 - 45366718
Alignment:
Q  33 agagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaaccttactaagattttggtgatcaattcatcaggaaga 132  Q
    ||||||||||||||||||  ||||||||||| | |||||||| ||||||||||| || |||||||||| || ||||| | | |||||||||| |||||||    
T  45366618 agagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaaccttagtaggatttggatcatcaattcatgaggaaga 45366717  T
Q  133 t 133  Q
    |    
T  45366718 t 45366718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 45385191 - 45385275
Alignment:
Q  40 agagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaaccttactaagattttggtgatcaattcat 124  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||| || ||||| | | ||||||||||    
T  45385191 agagaaaaccaagacttacaaacggatttgaaacgtatgagagacttaactggtaaccttagtaggatttggatcatcaattcat 45385275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 48862922 - 48862855
Alignment:
Q  33 agagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacctta 100  Q
    |||||||||||||||||| ||||| |||||| |||||||||| ||||||||||| |||||||||||||    
T  48862922 agagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggtaacctta 48862855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 45372440 - 45372521
Alignment:
Q  19 gcaaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacctta 100  Q
    |||||||| ||| ||||||||| ||||||||| |||||||||||  |||||||||| ||||||||||| ||||| |||||||    
T  45372440 gcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacctta 45372521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 48735713 - 48735777
Alignment:
Q  34 gagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    ||||||||||||||||| |||||||||||  |||||||||| ||||||||||| |||||||||||    
T  48735713 gagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacct 48735777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 48891104 - 48891025
Alignment:
Q  19 gcaaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    |||||||| ||| | |||| |||||||||||| |||||||||||| |||||||||| ||||||||||| |||| ||||||    
T  48891104 gcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataacct 48891025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 49041521 - 49041588
Alignment:
Q  19 gcaaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagactt 86  Q
    |||||||||||| ||||||||||||||||||| ||||| |||||| |||||||||  |||||||||||    
T  49041521 gcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagactt 49041588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 7771086 - 7771020
Alignment:
Q  32 cagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    ||||||||||||||||||| |||||||||||| |||||||||  ||||||||||| ||||| |||||    
T  7771086 cagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacct 7771020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 7774212 - 7774285
Alignment:
Q  19 gcaaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccgg 92  Q
    |||||||||||| ||||||||||||||||||||  |||||||||  |||||||| | ||||||||||| |||||    
T  7774212 gcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccgg 7774285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 7822664 - 7822585
Alignment:
Q  19 gcaaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    ||||| |||||| |||||||||||||||||||||| ||||||||  | |||||||| |||||| |||| ||||| |||||    
T  7822664 gcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7822585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 7877415 - 7877348
Alignment:
Q  19 gcaaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagactt 86  Q
    ||||||| |||| ||||||||||||||||||||  |||||||| | |||||||||| |||||||||||    
T  7877415 gcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagactt 7877348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 7904727 - 7904660
Alignment:
Q  19 gcaaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagactt 86  Q
    ||||| || ||| |||||||||||||||||||| ||||||||||  |||||||||| |||||||||||    
T  7904727 gcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagactt 7904660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 48156825 - 48156888
Alignment:
Q  34 gagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacc 97  Q
    ||||||||||||||||| |||||||||||| | |||||||| | ||||||||| ||||||||||    
T  48156825 gagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaacc 48156888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 48870237 - 48870162
Alignment:
Q  19 gcaaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggta 94  Q
    |||||| ||||| | ||||||||| ||||||| |||||||||||| |||||||||| |||||||| || |||||||    
T  48870237 gcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48870162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 48885923 - 48885848
Alignment:
Q  19 gcaaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggta 94  Q
    |||||| ||||| | ||||||||| ||||||| |||||||||||| |||||||||| |||||||| || |||||||    
T  48885923 gcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48885848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 7238116 - 7238170
Alignment:
Q  32 cagagataagagaaaaccatgacttacaaacggatttgaaacggataagagactt 86  Q
    ||||||||||||||||||| |||||||||||  ||||||||| ||||||||||||    
T  7238116 cagagataagagaaaaccaagacttacaaacacatttgaaacagataagagactt 7238170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 33134223 - 33134285
Alignment:
Q  33 agagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaa 95  Q
    ||||||||||||||| || | |||||||||| |||||||||| ||||||||||| ||||||||    
T  33134223 agagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaa 33134285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 48148082 - 48148148
Alignment:
Q  33 agagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacctt 99  Q
    |||||||||||||||||| |||||||| ||  |||||||||| ||||||||||| || |||||||||    
T  48148082 agagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggtaacctt 48148148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 7789769 - 7789705
Alignment:
Q  34 gagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    ||||||| ||||||||| |||||||||||| |||||||||  ||||||||||| ||||| |||||    
T  7789769 gagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacct 7789705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 7813175 - 7813096
Alignment:
Q  19 gcaaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    ||||| |||||  |||||||||||||||||||||| ||||||||  | |||||||| |||||| |||| ||||| |||||    
T  7813175 gcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7813096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 48170986 - 48171051
Alignment:
Q  33 agagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    ||||||||||| |||||| |||||||||||  |||||||||| | ||||||||| |||| ||||||    
T  48170986 agagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccgataacct 48171051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 48902632 - 48902567
Alignment:
Q  32 cagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacc 97  Q
    |||| |||||||||||||| |||||||||||  |||||||||| || |||||||| ||||| ||||    
T  48902632 cagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaacc 48902567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 7800325 - 7800253
Alignment:
Q  26 ggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    ||||| |||||| ||||||||||||||| ||||||||  | |||||||| |||||| |||| ||||| |||||    
T  7800325 ggggatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7800253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 33133718 - 33133651
Alignment:
Q  33 agagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacctta 100  Q
    ||||||||||||||||||   |||||||| | |||||||||| ||||||||||| |  ||||||||||    
T  33133718 agagataagagaaaaccaaagcttacaaatgaatttgaaacgaataagagacttcattggtaacctta 33133651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 284
Target Start/End: Original strand, 8371079 - 8371113
Alignment:
Q  250 aactagaccttacacccgtgctgccgcacgggtca 284  Q
    ||||||||||| |||||||||||||||||||||||    
T  8371079 aactagaccttgcacccgtgctgccgcacgggtca 8371113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 284
Target Start/End: Original strand, 23143186 - 23143220
Alignment:
Q  250 aactagaccttacacccgtgctgccgcacgggtca 284  Q
    ||||||||||| |||||||||||||||||||||||    
T  23143186 aactagaccttgcacccgtgctgccgcacgggtca 23143220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 284
Target Start/End: Complemental strand, 34708211 - 34708177
Alignment:
Q  250 aactagaccttacacccgtgctgccgcacgggtca 284  Q
    ||||||||||| |||||||||||||||||||||||    
T  34708211 aactagaccttgcacccgtgctgccgcacgggtca 34708177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 28024174 - 28024141
Alignment:
Q  251 actagaccttacacccgtgctgccgcacgggtca 284  Q
    |||||||||| |||||||||||||||||||||||    
T  28024174 actagaccttgcacccgtgctgccgcacgggtca 28024141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 48875539 - 48875474
Alignment:
Q  21 aaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagactt 86  Q
    |||||||||  | ||||| ||||||||||| ||||| |||||| |||||||||| || ||||||||    
T  48875539 aaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaacgaattagagactt 48875474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 29712866 - 29712929
Alignment:
Q  33 agagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaac 96  Q
    ||||||||||||||||||| ||||||||||| | |||||||| ||||||||||| |||||||||    
T  29712866 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 29712929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 29695829 - 29695757
Alignment:
Q  37 ataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaaccttactaagattt 109  Q
    |||||||| |||||| ||||||||||| |||||||||| ||||||||||| || |||||||||| || |||||    
T  29695829 ataagagataaccataacttacaaacgcatttgaaacgaataagagacttgactggtaaccttaataggattt 29695757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 42562728 - 42562791
Alignment:
Q  33 agagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaac 96  Q
    |||||| ||||||||||| |||||||||||| |||||||||| |||||||| || |||||||||    
T  42562728 agagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaac 42562791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 178699 - 178610
Alignment:
Q  34 gagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaaccttactaagattttggtgatcaattca 123  Q
    ||||| ||||| ||||| |||||||||||  |||||||||| |||||||||||||| ||||| |  | || ||||| | |||||||||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagacttaactggtaagcgaagtaggatttggatgatcaattca 178610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 9259129 - 9259162
Alignment:
Q  251 actagaccttacacccgtgctgccgcacgggtca 284  Q
    ||||||||||||||||||||||||||| ||||||    
T  9259129 actagaccttacacccgtgctgccgcatgggtca 9259162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 1812105 - 1812041
Alignment:
Q  34 gagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    |||||||||||||||||| ||||||||||  ||||| |||| || ||| |||| || ||||||||    
T  1812105 gagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacct 1812041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 16526303 - 16526339
Alignment:
Q  248 aaaactagaccttacacccgtgctgccgcacgggtca 284  Q
    |||||||||| || |||||||||||||||||||||||    
T  16526303 aaaactagactttccacccgtgctgccgcacgggtca 16526339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 34457635 - 34457599
Alignment:
Q  248 aaaactagaccttacacccgtgctgccgcacgggtca 284  Q
    |||||||| |||| |||||||||||||||||||||||    
T  34457635 aaaactagtccttgcacccgtgctgccgcacgggtca 34457599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 11024933 - 11024999
Alignment:
Q  32 cagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    ||||||||||||  |||||||||||||||||| |||||||||| || |||||||| |||||||||||    
T  11024933 cagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacct 11024999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 11015921 - 11015987
Alignment:
Q  32 cagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    ||||||||||||  ||| |||||||||||||| |||||||||| || |||||||| |||||||||||    
T  11015921 cagagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacct 11015987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 11006345 - 11006460
Alignment:
Q  19 gcaaaatggggagcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaaccttactaagattttggtgatca 118  Q
    ||||| || ||| ||||||||||||  |||||||||||||||||  | |||||||| ||||| ||||| ||||| ||||| |  |||||||   ||||||    
T  11006345 gcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatca 11006444  T
Q  119 attcatcaggaagata 134  Q
    |||||| ||| |||||    
T  11006445 attcatgaggcagata 11006460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 47452303 - 47452378
Alignment:
Q  32 cagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaaccttactaagat 107  Q
    |||||||||||||||||||||||||| ||| | | ||||| || | ||||||||| ||||| ||||| || |||||    
T  47452303 cagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaccaagat 47452378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 25437322 - 25437289
Alignment:
Q  251 actagaccttacacccgtgctgccgcacgggtca 284  Q
    |||||||||| |||||||||||||||||||||||    
T  25437322 actagaccttgcacccgtgctgccgcacgggtca 25437289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 20370355 - 20370391
Alignment:
Q  248 aaaactagaccttacacccgtgctgccgcacgggtca 284  Q
    ||||||||||| | |||||||||||||||||||||||    
T  20370355 aaaactagaccatccacccgtgctgccgcacgggtca 20370391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1234 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1234
Description:

Target: scaffold1234; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 1086 - 1050
Alignment:
Q  248 aaaactagaccttacacccgtgctgccgcacgggtca 284  Q
    ||||||||||||| |||||||||||||||||||||||    
T  1086 aaaactagaccttgcacccgtgctgccgcacgggtca 1050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 284
Target Start/End: Original strand, 11001322 - 11001357
Alignment:
Q  249 aaactagaccttacacccgtgctgccgcacgggtca 284  Q
    |||||||||||| |||||||||||||||||||||||    
T  11001322 aaactagaccttccacccgtgctgccgcacgggtca 11001357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 284
Target Start/End: Original strand, 15494151 - 15494185
Alignment:
Q  250 aactagaccttacacccgtgctgccgcacgggtca 284  Q
    ||||||||||| |||||||||||||||||||||||    
T  15494151 aactagaccttgcacccgtgctgccgcacgggtca 15494185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 40969123 - 40969087
Alignment:
Q  248 aaaactagaccttacacccgtgctgccgcacgggtca 284  Q
    |||||||||| || |||||||||||||||||||||||    
T  40969123 aaaactagactttccacccgtgctgccgcacgggtca 40969087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 12597257 - 12597298
Alignment:
Q  243 ttatgaaaactagaccttacacccgtgctgccgcacgggtca 284  Q
    |||| |||||||||| || |||||||||||||||||||||||    
T  12597257 ttattaaaactagactttccacccgtgctgccgcacgggtca 12597298  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 21015457 - 21015392
Alignment:
Q  33 agagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaaccggtaacct 98  Q
    |||||||||||||||| || ||||||||||  | |||||||| | ||||||| | |||||||||||    
T  21015457 agagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacct 21015392  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 46506 - 46470
Alignment:
Q  248 aaaactagaccttacacccgtgctgccgcacgggtca 284  Q
    |||||||||| || |||||||||||||||||||||||    
T  46506 aaaactagactttccacccgtgctgccgcacgggtca 46470  T

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