View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3208_low_13 (Length: 323)

Name: NF3208_low_13
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3208_low_13
NF3208_low_13
[»] chr5 (6 HSPs)
chr5 (8-309)||(29687643-29687943)
chr5 (81-303)||(29712728-29712949)
chr5 (18-303)||(29695750-29696034)
chr5 (218-306)||(42562726-42562814)
chr5 (224-309)||(178611-178696)
chr5 (185-283)||(1812043-1812141)
[»] chr4 (33 HSPs)
chr4 (184-309)||(48156788-48156913)
chr4 (185-309)||(45372419-45372543)
chr4 (185-309)||(48862833-48862960)
chr4 (187-309)||(45366582-45366707)
chr4 (149-309)||(48170913-48171075)
chr4 (187-279)||(7771026-7771118)
chr4 (188-276)||(7904657-7904745)
chr4 (184-276)||(7238081-7238173)
chr4 (227-299)||(48735719-48735791)
chr4 (184-283)||(48891027-48891126)
chr4 (188-309)||(48148047-48148171)
chr4 (190-279)||(7813102-7813191)
chr4 (190-279)||(7822591-7822680)
chr4 (187-279)||(7789711-7789803)
chr4 (184-276)||(49044590-49044682)
chr4 (184-279)||(7907947-7908042)
chr4 (224-309)||(47207526-47207611)
chr4 (183-276)||(49041498-49041591)
chr4 (226-309)||(45385190-45385273)
chr4 (188-281)||(48898342-48898438)
chr4 (190-279)||(7800259-7800348)
chr4 (190-282)||(33134190-33134285)
chr4 (201-277)||(49048977-49049053)
chr4 (184-276)||(50251169-50251261)
chr4 (188-279)||(7774194-7774285)
chr4 (220-279)||(48902572-48902631)
chr4 (150-276)||(37827322-37827447)
chr4 (188-306)||(48875441-48875559)
chr4 (186-283)||(7765239-7765336)
chr4 (224-309)||(50668635-50668720)
chr4 (231-281)||(48870162-48870212)
chr4 (231-281)||(48885848-48885898)
chr4 (188-277)||(7877344-7877433)
[»] chr8 (6 HSPs)
chr8 (184-275)||(4032277-4032368)
chr8 (184-283)||(15348480-15348579)
chr8 (200-309)||(12199899-12200008)
chr8 (200-309)||(12444327-12444436)
chr8 (200-309)||(12194893-12195002)
chr8 (200-309)||(12439321-12439430)
[»] chr3 (4 HSPs)
chr3 (87-309)||(11006224-11006448)
chr3 (149-279)||(47452237-47452363)
chr3 (87-309)||(11024799-11025023)
chr3 (239-283)||(11015941-11015985)
[»] chr6 (2 HSPs)
chr6 (109-283)||(21015394-21015567)
chr6 (193-296)||(21980014-21980117)
[»] chr1 (4 HSPs)
chr1 (185-282)||(24309796-24309893)
chr1 (227-296)||(24322067-24322136)
chr1 (185-283)||(24340032-24340130)
chr1 (227-282)||(24415456-24415511)
[»] scaffold0508 (1 HSPs)
scaffold0508 (185-283)||(11880-11978)
[»] chr2 (1 HSPs)
chr2 (187-296)||(21425991-21426100)


Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 29687943 - 29687643
Alignment:
Q  8 gagatgaaaaatccatgtccgaagaagaagaactatcataatcatattcctcaaataagaaactaatgtctggtgaataagaagcactatcatcgtgaag 107  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29687943 gagatgaaaaatccatgtctgaagaagaagaactatcataatcatattcctcaaataagaaactaatgtccggtgaataagaagcactatcatcgtgaag 29687844  T
Q  108 cgatgtttcaaaatctatagatagagattcaagatctggatttatgaacagaattctaggagtgtgtgccttggcgggtaagttgaaaatgagaatttgc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  29687843 cgatgtttcaaaatctatagatagagattcaagatctggatttatgaacagaattctaggagtgtgtgcattggc-ggtaagttgaaaatgagaatttgc 29687745  T
Q  208 aaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaactttagaaggatttgaatgatcaat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29687744 aaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaactttagaaggatttgaatgatcaat 29687645  T
Q  308 tc 309  Q
    ||    
T  29687644 tc 29687643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 81 - 303
Target Start/End: Original strand, 29712728 - 29712949
Alignment:
Q  81 tgaataagaagcactatcatcgtgaagcgatgtttcaaaatctatagatagagattcaagatctggatttatgaacagaattctaggagtgtgtgccttg 180  Q
    |||||| ||||||||||||||||  || |||||||| ||||| |||||||||||||| |||| |||| |||| || ||||||||||||| |||||  |||    
T  29712728 tgaataggaagcactatcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttg 29712827  T
Q  181 gcgggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggt 280  Q
    |||| ||||||||||||| |||||||| || | || |||||| || |||||||||||  |||||||||| |||||||| || ||||||||||||||||||    
T  29712828 gcgg-taagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggt 29712926  T
Q  281 aactttagaaggatttgaatgat 303  Q
    ||| ||| |||||||||||||||    
T  29712927 aacattaaaaggatttgaatgat 29712949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 29696034 - 29695750
Alignment:
Q  18 atccatgtccgaagaagaagaactatcataatcatattcctcaaataagaaactaatgtctggtgaataagaagcactatcatcgtgaagcgatgtttca 117  Q
    |||||||||||| |||||||||||||  ||||| |  || ||||  || ||||||||||| | || |||   |||||||||||||| |||||||  ||||    
T  29696034 atccatgtccgacgaagaagaactatagtaatcttcatcgtcaatcaaaaaactaatgtccgttgtatatacagcactatcatcgttaagcgataattca 29695935  T
Q  118 aaatctatagatagagattcaagatctggatttatgaacagaattctaggagtgtgtgccttggcgg--gtaagttgaaaatgagaatttgcaaagtgag 215  Q
    | ||||||||||||||||| ||||| |||| |||| |||| |||||||   |||||||   | ||||  |||||||||||||| ||||||||||||||||    
T  29695934 agatctatagatagagattgaagatatggagttatcaacataattctattcgtgtgtg---tagcggtggtaagttgaaaatgtgaatttgcaaagtgag 29695838  T
Q  216 gttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaactttagaaggatttgaatgat 303  Q
    |||||||||| ||||| |||||  |||||||||| || ||||| || ||||||||||| || |||||| |||  ||||||||||||||    
T  29695837 gttgagatataagagataaccataacttacaaacgcatttgaaacgaataagagacttgactggtaaccttaataggatttgaatgat 29695750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 306
Target Start/End: Original strand, 42562726 - 42562814
Alignment:
Q  218 tgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaactttagaaggatttgaatgatcaa 306  Q
    ||||| || ||||||||||||||||||||||| || ||||| || |||||||| |||||||||||| ||||  | ||||| ||||||||    
T  42562726 tgagagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaacattagccgtatttggatgatcaa 42562814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 178696 - 178611
Alignment:
Q  224 atgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaactttagaaggatttgaatgatcaattc 309  Q
    |||||||| |||||||||||||||||||| ||||| || ||||||||||| || |||||    || |||||||| |||||||||||    
T  178696 atgagagataaccaagacttacaaacacatttgaaacgaataagagacttaactggtaagcgaagtaggatttggatgatcaattc 178611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 283
Target Start/End: Complemental strand, 1812141 - 1812043
Alignment:
Q  185 gtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaac 283  Q
    ||||||||||||||| ||||||||||||| || |  || || |||||||||||  |||||||||| || ||| | ||||| ||| ||||||| ||||||    
T  1812141 gtaagttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaac 1812043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 184 - 309
Target Start/End: Original strand, 48156788 - 48156913
Alignment:
Q  184 ggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaac 283  Q
    ||||| ||||||||||||||||||||| ||||  |  || || ||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||    
T  48156788 ggtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaac 48156887  T
Q  284 tttagaaggatttgaatgatcaattc 309  Q
      || |||||||||||| ||||||||    
T  48156888 cataaaaggatttgaattatcaattc 48156913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 45372419 - 45372543
Alignment:
Q  185 gtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaact 284  Q
    |||| ||||||||| ||||||||||| ||||| | ||| || | |||||||||||||||||||||||| ||||| |||||||||||||||||||| |||     
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  285 ttagaaggatttgaatgatcaattc 309  Q
    |||| || |||||||| ||||||||    
T  45372519 ttagtagaatttgaatcatcaattc 45372543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 48862960 - 48862833
Alignment:
Q  185 gtaagttgaaaatgagaatttgcaaagtgaggtt---gagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggta 281  Q
    |||||||||||||| ||||||||||||||||| |   |||| || ||||||||||||||||| ||||| || ||||| || |||||||||||||||||||    
T  48862960 gtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggta 48862861  T
Q  282 actttagaaggatttgaatgatcaattc 309  Q
    || |||| |||||| | |||||||||||    
T  48862860 accttagcaggattaggatgatcaattc 48862833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 309
Target Start/End: Original strand, 45366582 - 45366707
Alignment:
Q  187 aagttgaaaatgagaatttgcaaagtgaggtt---gagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaac 283  Q
    |||||||||||| |||||||||||||| |  |   |||| || |||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||    
T  45366582 aagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaac 45366681  T
Q  284 tttagaaggatttgaatgatcaattc 309  Q
     |||| |||||||| || ||||||||    
T  45366682 cttagtaggatttggatcatcaattc 45366707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 149 - 309
Target Start/End: Original strand, 48170913 - 48171075
Alignment:
Q  149 ttatgaacagaattctaggagtgtgtgccttggcgggtaagttgaaaatgagaatttgcaaagtgaggtt---gagatatgagagaaaaccaagacttac 245  Q
    ||||||||| |||| || |||||||||  | ||||| ||| ||||||||| ||||||||||||||||| |   |||| || |||| ||||||||||||||    
T  48170913 ttatgaacataattttacgagtgtgtgtttaggcgg-taatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttac 48171011  T
Q  246 aaacacacttgaagcgtataagagacttcaccggtaactttagaaggatttgaatgatcaattc 309  Q
    ||||||| ||||| |||| |||||||||||||| |||| | || || |||||||  ||||||||    
T  48171012 aaacacatttgaaacgtagaagagacttcaccgataacctcagcagaatttgaactatcaattc 48171075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 7771118 - 7771026
Alignment:
Q  187 aagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccgg 279  Q
    |||||||||||| |||||| |||||||||| | ||| || ||||||||||||||||||||||| || ||||| | ||||||||||||||||||    
T  7771118 aagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccgg 7771026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 276
Target Start/End: Complemental strand, 7904745 - 7904657
Alignment:
Q  188 agttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcac 276  Q
    ||||||||||| ||||||||||||||||| | ||| || |||||||||||  ||||||||||||| ||||| |||||||||||||||||    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcac 7904657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 276
Target Start/End: Original strand, 7238081 - 7238173
Alignment:
Q  184 ggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcac 276  Q
    |||| |||| ||||| ||||||||||||||||| | ||| || |||||||||||||||||||||||||| ||||| |  ||||||||||||||    
T  7238081 ggtatgttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcac 7238173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 48735719 - 48735791
Alignment:
Q  227 agagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaactttagaaggatttgaa 299  Q
    |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| | ||||| |||||||    
T  48735719 agagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacctcagaagaatttgaa 48735791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 283
Target Start/End: Complemental strand, 48891126 - 48891027
Alignment:
Q  184 ggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaac 283  Q
    ||||||||||||||| ||||||||||| ||||| |  || |  ||||||||||||||||||||||| || ||||| |||||||||||||| |||| ||||    
T  48891126 ggtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataac 48891027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 188 - 309
Target Start/End: Original strand, 48148047 - 48148171
Alignment:
Q  188 agttgaaaatgagaatttgcaaagtgaggtt---gagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaact 284  Q
    |||| |||||| |||||||| |||||||| |   |||| || |||||||||||||||||||| ||||| ||||| || |||||||||||||| ||||||     
T  48148047 agttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggtaacc 48148146  T
Q  285 ttagaaggatttgaatgatcaattc 309  Q
    ||  |||||||||||  ||||||||    
T  48148147 ttgaaaggatttgaactatcaattc 48148171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 7813191 - 7813102
Alignment:
Q  190 ttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccgg 279  Q
    |||||| || || ||||||||||| |||| ||| || ||||||||||| || ||||||||||||||||| ||||||||| ||||||||||    
T  7813191 ttgaaattgtgactttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7813102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 7822680 - 7822591
Alignment:
Q  190 ttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccgg 279  Q
    |||||| || |||||||||||||| || | ||| || ||||||||||| || ||||||||||||||||| ||||||||| ||||||||||    
T  7822680 ttgaaattgtgaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7822591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 7789803 - 7789711
Alignment:
Q  187 aagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccgg 279  Q
    |||||||||||| |||||| |||||||||| |  || || | ||||||||||||||||||||| || ||||| | ||||||||||||||||||    
T  7789803 aagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccgg 7789711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 276
Target Start/End: Original strand, 49044590 - 49044682
Alignment:
Q  184 ggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcac 276  Q
    ||||| || |||||| |||||||||||||| | |||||| || |||||||||||  ||||||||||||||||||| |||| ||||||| ||||    
T  49044590 ggtaatttcaaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcac 49044682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 279
Target Start/End: Complemental strand, 7908042 - 7907947
Alignment:
Q  184 ggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccgg 279  Q
    ||||||||||||||| ||||||||||| || ||   ||| || ||||||||||| ||||||| |||| ||||||| ||| ||||||||||||||||    
T  7908042 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccgg 7907947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 47207611 - 47207526
Alignment:
Q  224 atgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaactttagaaggatttgaatgatcaattc 309  Q
    ||||||||||| |||||||| ||||||| ||| || ||||||||||||||||||||||||| ||  ||||||   |||||||||||    
T  47207611 atgagagaaaatcaagacttccaaacactcttaaaacgtataagagacttcaccggtaactataataggattaagatgatcaattc 47207526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 49041498 - 49041591
Alignment:
Q  183 gggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcac 276  Q
    ||||||||| |||||||||||||||||| || || | ||| || ||||||||||||||||| ||||| || ||||| |  ||||||||||||||    
T  49041498 gggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcac 49041591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 45385190 - 45385273
Alignment:
Q  226 gagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaactttagaaggatttgaatgatcaattc 309  Q
    ||||||||||||||||||||||||  | ||||| ||||| |||||||| || |||||| |||| |||||||| || ||||||||    
T  45385190 gagagaaaaccaagacttacaaacggatttgaaacgtatgagagacttaactggtaaccttagtaggatttggatcatcaattc 45385273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 48898438 - 48898342
Alignment:
Q  188 agttgaaaatgagaatttgcaaagtgaggtt---gagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggta 281  Q
    ||||||||||| |||||||||||||| |  |   |||| || || || |||||||||||||||||||||||||| ||| ||||||||||||| ||||    
T  48898438 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggta 48898342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 7800348 - 7800259
Alignment:
Q  190 ttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccgg 279  Q
    |||||| || |||||||||||| | || | ||| |  ||||||||||| || ||||||||||||||||| ||||||||| ||||||||||    
T  7800348 ttgaaattgtgaatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7800259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 282
Target Start/End: Original strand, 33134190 - 33134285
Alignment:
Q  190 ttgaaaatgagaatttgcaaagtgaggttga---gatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaa 282  Q
    ||||||||| ||||||||||||||||| | |   || || |||||||| |||| ||||||||| || ||||| || ||||||||||||||||||||    
T  33134190 ttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaa 33134285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 49048977 - 49049053
Alignment:
Q  201 aatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcacc 277  Q
    |||||||||| || | |||||| || |||||||||||  ||||||||||||||||||| |||| ||||||| |||||    
T  49048977 aatttgcaaaatgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcacc 49049053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 276
Target Start/End: Original strand, 50251169 - 50251261
Alignment:
Q  184 ggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcac 276  Q
    |||||||||||||||  |||||||| |||| || | ||| || |||||||||||||||||| |||| ||||| ||  ||||||||| ||||||    
T  50251169 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacccactttaattgtataagagccttcac 50251261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 7774194 - 7774285
Alignment:
Q  188 agttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccgg 279  Q
    ||||||||||| ||||||||||| || || | ||| || |||||||||||   |||||||||||| |||||  | |||||||||||||||||    
T  7774194 agttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccgg 7774285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 48902631 - 48902572
Alignment:
Q  220 agatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccgg 279  Q
    |||||| |||||||||||||||||||||||||| ||||| || || |||||||| |||||    
T  48902631 agatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccgg 48902572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 276
Target Start/End: Original strand, 37827322 - 37827447
Alignment:
Q  150 tatgaacagaattctaggagtgtgtgccttggcgggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaac 249  Q
    |||||||||||||| | |||| |||||  |||| | ||||||||||||| |||||||||||||  || | |||||| ||||  ||||| |||||||||||    
T  37827322 tatgaacagaattcgacgagtttgtgctgtggccg-taagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaac 37827420  T
Q  250 acacttgaagcgtataagagacttcac 276  Q
     ||  | || | |||||||||||||||    
T  37827421 gcatgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 306
Target Start/End: Complemental strand, 48875559 - 48875441
Alignment:
Q  188 agttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaacttta 287  Q
    ||||||||||| ||||||| ||| || ||||  || |||||||||||||||||||| ||||| || ||||| || || |||||||| || | |||| | |    
T  48875559 agttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaacgaattagagacttgactgataacctca 48875460  T
Q  288 gaaggatttgaatgatcaa 306  Q
    | || ||||||| ||||||    
T  48875459 gcagaatttgaacgatcaa 48875441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 7765336 - 7765239
Alignment:
Q  186 taagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaac 283  Q
    ||||||| ||||| ||||||||||||||||| | ||| || | |||||||||  |||||||||  ||||||||   ||  ||||||||||||||||||    
T  7765336 taagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaac 7765239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 50668720 - 50668635
Alignment:
Q  224 atgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaactttagaaggatttgaatgatcaattc 309  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||| | ||||| || ||| | |  |  |||||||||||||||||    
T  50668720 atgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctcaccaaaatttgaatgatcaattc 50668635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 48870212 - 48870162
Alignment:
Q  231 aaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggta 281  Q
    ||||||||||||||||||| || ||||| || |||||||| ||||||||||    
T  48870212 aaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48870162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 48885898 - 48885848
Alignment:
Q  231 aaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggta 281  Q
    ||||||||||||||||||| || ||||| || |||||||| ||||||||||    
T  48885898 aaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48885848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 277
Target Start/End: Complemental strand, 7877433 - 7877344
Alignment:
Q  188 agttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcacc 277  Q
    ||||||||||| ||||||||||| |  || | ||| || |||||||||||   ||||||||  || ||||| ||||||||||||||||||    
T  7877433 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcacc 7877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 4032277 - 4032368
Alignment:
Q  184 ggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttca 275  Q
    ||||| ||||||||| ||||||||||||||||| | |||||| ||||  |||||||| ||||||||||||||||| ||||||||||||||||    
T  4032277 ggtaatttgaaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttca 4032368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 283
Target Start/End: Complemental strand, 15348579 - 15348480
Alignment:
Q  184 ggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaac 283  Q
    ||||| ||||||||| |||||||| |||| ||| | ||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||    
T  15348579 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaac 15348480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 12200008 - 12199899
Alignment:
Q  200 gaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaactttagaaggatttgaa 299  Q
    ||||||||||||||||| | ||| || ||||||||||| |||||||||||||| ||||| | || ||||||||||||||| ||| | || ||||||||||    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12199909  T
Q  300 tgatcaattc 309  Q
    |||| |||||    
T  12199908 tgattaattc 12199899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 12444436 - 12444327
Alignment:
Q  200 gaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaactttagaaggatttgaa 299  Q
    ||||||||||||||||| | ||| || ||||||||||| |||||||||||||| ||||| | || ||||||||||||||| ||| | || ||||||||||    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12444337  T
Q  300 tgatcaattc 309  Q
    |||| |||||    
T  12444336 tgattaattc 12444327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 12195002 - 12194893
Alignment:
Q  200 gaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaactttagaaggatttgaa 299  Q
    |||||||||||||| || | ||| || ||||| ||||| ||||||||||  || ||||| | || ||||||||||||||| ||| | || ||||||||||    
T  12195002 gaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12194903  T
Q  300 tgatcaattc 309  Q
    |||| |||||    
T  12194902 tgattaattc 12194893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 12439430 - 12439321
Alignment:
Q  200 gaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaactttagaaggatttgaa 299  Q
    |||||||||||||| || | ||| || ||||| ||||| ||||||||||  || ||||| | || ||||||||||||||| ||| | || ||||||||||    
T  12439430 gaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12439331  T
Q  300 tgatcaattc 309  Q
    |||| |||||    
T  12439330 tgattaattc 12439321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 309
Target Start/End: Original strand, 11006224 - 11006448
Alignment:
Q  87 agaagcactatcatcgtgaagcgatgtttcaaaatctatagatagagattcaagatctggattt---atgaacagaattctaggagtgtgtgccttggcg 183  Q
    |||||||  |||||||| |||||||| |||||||||||| ||| ||  ||||||| ||||| ||   ||||||| |||||||  ||||||||   | | |    
T  11006224 agaagcagaatcatcgttaagcgatgcttcaaaatctatggatcgaatttcaagagctggagttgacatgaacacaattctattagtgtgtgttctagtg 11006323  T
Q  184 ggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaac 283  Q
    |  ||| | |||||| || |||||||||||||| | ||| || ||||  ||||| |||||||||||||||||||| |||||||| ||||||||||| |||    
T  11006324 ga-aaggtcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaac 11006422  T
Q  284 tttagaaggatttgaatgatcaattc 309  Q
     | |  | |||||| |||||||||||    
T  11006423 ctcaacaagatttgtatgatcaattc 11006448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 279
Target Start/End: Original strand, 47452237 - 47452363
Alignment:
Q  149 ttatgaacagaattctaggagtgtgtgccttggcgggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaa 248  Q
    |||| |||| ||||||| ||||||||||   ||||| |||||| |||||| |  ||||||||| |||| | ||| || ||||||||||| |||||| |||    
T  47452237 ttataaacacaattctacgagtgtgtgc---ggcgg-taagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaa 47452332  T
Q  249 cacacttgaagcgtataagagacttcaccgg 279  Q
      ||||||||||||| |||||||||||||||    
T  47452333 tgcacttgaagcgtacaagagacttcaccgg 47452363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 309
Target Start/End: Original strand, 11024799 - 11025023
Alignment:
Q  87 agaagcactatcatcgtgaagcgatgtttcaaaatctatagatagagattcaagatctggattt---atgaacagaattctaggagtgtgtgccttggcg 183  Q
    |||||||  |||||||| |||||||| |||||||||||| ||| ||| ||| ||| || || ||   ||||||| |||||||  ||||||||  |||  |    
T  11024799 agaagcagaatcatcgttaagcgatgcttcaaaatctatggatcgagtttccagagctagagttgacatgaacacaattctattagtgtgtg--ttgcag 11024896  T
Q  184 ggtaa-gttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaa 282  Q
    || || ||| |||||| || |||||||||| | | | ||| || ||||  ||||| ||||||||||| || ||||| ||||| |||||||||||||||||    
T  11024897 gggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaa 11024996  T
Q  283 ctttagaaggatttgaatgatcaattc 309  Q
    | | |  | |||||| |||||||||||    
T  11024997 cctcaacatgatttgtatgatcaattc 11025023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 11015941 - 11015985
Alignment:
Q  239 gacttacaaacacacttgaagcgtataagagacttcaccggtaac 283  Q
    ||||||||||| || ||||| ||||| ||||||||||||||||||    
T  11015941 gacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 11015985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 283
Target Start/End: Complemental strand, 21015567 - 21015394
Alignment:
Q  109 gatgtttcaaaatctatagatagagattcaagatctggattt---atgaacagaattctaggagtgtgtgccttggcgggtaagttgaaaatgagaattt 205  Q
    |||||||||||||| ||  || ||| |||||| |||||||||   ||||||| |||||||||| |||||||   ||| | ||| || |||||| ||| ||    
T  21015567 gatgtttcaaaatcgatcaatcgagtttcaaggtctggatttgacatgaacaaaattctaggattgtgtgc---ggcag-taatttcaaaatgtgaaatt 21015472  T
Q  206 gcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaac 283  Q
    |||||||| | |||||| || ||||||||| |  ||||||||||||||||||| |||| ||||||| | |||||||||    
T  21015471 gcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaac 21015394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 296
Target Start/End: Original strand, 21980014 - 21980117
Alignment:
Q  193 aaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaactttagaagg 292  Q
    |||||| ||||| |||||||  || ||||| ||||||||||||||||||||||||||||||||||| |||   |||||||| || ||| || |||| |||    
T  21980014 aaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgtgagagagactttactggttaccttagcagg 21980113  T
Q  293 attt 296  Q
    ||||    
T  21980114 attt 21980117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 24309893 - 24309796
Alignment:
Q  185 gtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaa 282  Q
    |||||||||||||| ||||||||||||||||  | ||| || |||||||||||  ||||||||||  | ||||| || ||||||||||| ||||||||    
T  24309893 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 24309796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 24322136 - 24322067
Alignment:
Q  227 agagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaactttagaaggattt 296  Q
    ||||||||||||||||||||||| || ||||| || ||||||||||||||| | ||| ||||||||||||    
T  24322136 agagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaaccttagaaggattt 24322067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 283
Target Start/End: Complemental strand, 24340130 - 24340032
Alignment:
Q  185 gtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaac 283  Q
    |||| |||||| || |||||||||||||||   | ||| || || |||||||| |||||||||||| | ||||| || ||||||||||| |||||||||    
T  24340130 gtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagacttaaccggtaac 24340032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 24415511 - 24415456
Alignment:
Q  227 agagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaa 282  Q
    ||||||||||||||||||| ||| || ||||| || ||||||||||| ||||||||    
T  24415511 agagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaa 24415456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 283
Target Start/End: Complemental strand, 11978 - 11880
Alignment:
Q  185 gtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaac 283  Q
    |||||||||||||| |||||||||||||||   | ||| || ||||||||||| |||||||||||  | ||||| || ||||||||||| | |||||||    
T  11978 gtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaatcggtaac 11880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 21426100 - 21425991
Alignment:
Q  187 aagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcaccggtaacttt 286  Q
    |||||||||||| ||| ||| ||| ||||| ||||| |||| ||||| |||  ||||||| |||||| || ||||||  | || ||||||||| ||| |     
T  21426100 aagttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccataacttacagacacacctgcagcgtagtaaagtcttcaccggcaacctc 21426001  T
Q  287 agaaggattt 296  Q
    ||||||||||    
T  21426000 agaaggattt 21425991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University