View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3208_low_16 (Length: 300)

Name: NF3208_low_16
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3208_low_16
NF3208_low_16
[»] chr7 (2 HSPs)
chr7 (9-284)||(26281961-26282240)
chr7 (99-284)||(24805306-24805499)
[»] chr4 (2 HSPs)
chr4 (96-284)||(1774839-1775036)
chr4 (18-100)||(1775146-1775228)
[»] chr8 (2 HSPs)
chr8 (99-284)||(16239349-16239542)
chr8 (18-100)||(16239655-16239737)
[»] chr6 (1 HSPs)
chr6 (99-284)||(1708607-1708800)
[»] chr5 (2 HSPs)
chr5 (99-284)||(15275627-15275820)
chr5 (18-100)||(15275933-15276015)
[»] chr3 (4 HSPs)
chr3 (99-284)||(18151239-18151432)
chr3 (99-228)||(12413296-12413432)
chr3 (18-100)||(18151545-18151627)
chr3 (18-91)||(12413554-12413627)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 26282240 - 26281961
Alignment:
Q  9 agcaaaggcagaaaattcagaaaactttcaaatcaccggtgattctacgaattggaagaatgatacatactgaaaagtgaaagcgtctgaaaatcttgtt 108  Q
    |||| |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26282240 agcagaggcagaaaattcaaaaaaatttcaaatcactggtgattctacgaattggaagaatgatacatactgaaaagtgaaagcgtctgaaaatcttgtt 26282141  T
Q  109 gatgtgcttcaaatgcgattttctgaagatcaacaaattaatgttgttttacaggctgtagcatatgaaatgttatatttcaagttcaagaatgttttac 208  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26282140 gatgtgcttcaaatgcgattttctgaagatccacaaattaatgttgttttacaggctgtagcatatgaaatgttatatttcaacttcaagaatgttttac 26282041  T
Q  209 aaga----aaatgaaatgcactttattggcataggtacctgatgttgcaagtgctcgaaatggttctattggtaacaatc 284  Q
    ||||    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26282040 aagaaattaaatgaaatacactttattcgcataggtacctgatgttgcaagtgctcgaaatggttctattggtaacaatc 26281961  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 284
Target Start/End: Original strand, 24805306 - 24805499
Alignment:
Q  99 aaatcttgttgatgtgcttcaaatgcgattttctgaagatcaacaaattaatgttgttttacaggctgtagcatatga-------aatgttatatttcaa 191  Q
    ||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||  | ||       ||| |||| ||||||    
T  24805306 aaatcttgttgctgtgcttcaaatgcgattttctgatgatccacaaattaatgctgtcttacaggctgtagctcaagaggtaataaatcttatttttcaa 24805405  T
Q  192 gttcaagaatgttttacaagaaaatgaaatgcactttattgg-cataggtacctgatgttgcaagtgctcgaaatggttctattggtaacaatc 284  Q
     |||||||||||||| ||||||||| |||| |||||| ||   | ||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  24805406 cttcaagaatgtttttcaagaaaataaaatacactttttttcacttaggtacctgatgttgcaagtgctccaaatggttctattggtaataatc 24805499  T

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Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 96 - 284
Target Start/End: Complemental strand, 1775036 - 1774839
Alignment:
Q  96 tgaaaatcttgttgatgtgcttcaaatgcgattttctgaagatcaacaaattaatgttgttttacaggctgtagc-------atatgaaatgttatattt 188  Q
    |||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||        ||  |||| |||| |||    
T  1775036 tgaaaatcttgttgttgtgcttcaaatgcgattttctgatgatccacaaattaatgatgtcttacaggctgtagctcaagaggtaataaatcttattttt 1774937  T
Q  189 caagttcaagaatgttttacaagaaaatgaaatgcactttattggca--taggtacctgatgttgcaagtgctcgaaatggttctattggtaacaatc 284  Q
    ||| |||||||||||||| ||||||||| |||| || ||| ||  ||  ||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  1774936 caacttcaagaatgtttttcaagaaaataaaatacatttttttttcacttaggtacctgatgttgcaagtgctccaaatggttctattggtaataatc 1774839  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 1775228 - 1775146
Alignment:
Q  18 agaaaattcagaaaactttcaaatcaccggtgattctacgaattggaagaatgatacatactgaaaagtgaaagcgtctgaaa 100  Q
    ||||||||||||||| | |||| |||| |  |||||||| ||||||| |||||||||||||| ||||||||||| | ||||||    
T  1775228 agaaaattcagaaaattctcaagtcactgaagattctacaaattggatgaatgatacatactcaaaagtgaaagggcctgaaa 1775146  T

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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 284
Target Start/End: Complemental strand, 16239542 - 16239349
Alignment:
Q  99 aaatcttgttgatgtgcttcaaatgcgattttctgaagatcaacaaattaatgttgttttacaggctgtagc-------atatgaaatgttatatttcaa 191  Q
    ||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||        ||  |||| |||| ||||||    
T  16239542 aaatcttgttgttgtgcttcaaatgcgattttctgatgatccacaaattaatgttgtcttacaggctgtagctcaagaggtaataaatcttatttttcaa 16239443  T
Q  192 gttcaagaatgttttacaagaaaatgaaatgcac-tttattggcataggtacctgatgttgcaagtgctcgaaatggttctattggtaacaatc 284  Q
     |||||||||||||| |||| |||| |||| ||| ||| ||  | ||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  16239442 cttcaagaatgtttttcaagtaaataaaatacactttttttcacttaggtacctgatgttgcaagtgctccaaatggttctattggtaataatc 16239349  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 16239737 - 16239655
Alignment:
Q  18 agaaaattcagaaaactttcaaatcaccggtgattctacgaattggaagaatgatacatactgaaaagtgaaagcgtctgaaa 100  Q
    ||||||||||||||| |||||| |||| |  |||||||| ||||||| |||||||||||||| ||||||||||| | ||||||    
T  16239737 agaaaattcagaaaattttcaagtcactgaagattctacaaattggatgaatgatacatactcaaaagtgaaagggcctgaaa 16239655  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 284
Target Start/End: Original strand, 1708607 - 1708800
Alignment:
Q  99 aaatcttgttgatgtgcttcaaatgcgattttctgaagatcaacaaattaatgttgttttacaggctgtagcatatga-------aatgttatatttcaa 191  Q
    ||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||  | ||       ||| |||| ||||||    
T  1708607 aaatcttgttgctgtgcttcaaatgcgattttctgatgatccacaaattaatgctgtcttacaggctgtagctcaagaggtaataaatcttatttttcaa 1708706  T
Q  192 gttcaagaatgttttacaagaaaatgaaatgcactttattgg-cataggtacctgatgttgcaagtgctcgaaatggttctattggtaacaatc 284  Q
     |||||||||||||| ||||||||| |||| |||||| ||   | ||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  1708707 cttcaagaatgtttttcaagaaaataaaatacactttttttcacttaggtacctgatgttgcaagtgctccaaatggttctattggtaataatc 1708800  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 284
Target Start/End: Complemental strand, 15275820 - 15275627
Alignment:
Q  99 aaatcttgttgatgtgcttcaaatgcgattttctgaagatcaacaaattaatgttgttttacaggctgtagcatatga-------aatgttatatttcaa 191  Q
    ||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||  | ||       ||| |||| ||||||    
T  15275820 aaatcttgttgctgtgcttcaaatgcgattttctgatgatccacaaattaatgctgtcttacaggctgtagctcaagaggtaataaatcttatttttcaa 15275721  T
Q  192 gttcaagaatgttttacaagaaaatgaaatgcactttattgg-cataggtacctgatgttgcaagtgctcgaaatggttctattggtaacaatc 284  Q
     |||||||||||||| ||||||||| |||| |||||| ||   | ||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  15275720 cttcaagaatgtttttcaagaaaataaaatacactttttttcacttaggtacctgatgttgcaagtgctccaaatggttctattggtaataatc 15275627  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 15276015 - 15275933
Alignment:
Q  18 agaaaattcagaaaactttcaaatcaccggtgattctacgaattggaagaatgatacatactgaaaagtgaaagcgtctgaaa 100  Q
    ||||||||||||||| |||||| |||| |  |||||||| ||||||| |||||||||||||| ||||||||||| | ||||||    
T  15276015 agaaaattcagaaaattttcaagtcactgaagattctacaaattggatgaatgatacatactcaaaagtgaaagggcctgaaa 15275933  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 284
Target Start/End: Complemental strand, 18151432 - 18151239
Alignment:
Q  99 aaatcttgttgatgtgcttcaaatgcgattttctgaagatcaacaaattaatgttgttttacaggctgtagcatatga-------aatgttatatttcaa 191  Q
    ||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||  | ||       ||| |||| ||||||    
T  18151432 aaatcttgttgctgtgcttcaaatgcgattttctgatgatccacaaattaatgctgtcttacaggctgtagctcaagaggtaataaatcttatttttcaa 18151333  T
Q  192 gttcaagaatgttttacaagaaaatgaaatgcactttattgg-cataggtacctgatgttgcaagtgctcgaaatggttctattggtaacaatc 284  Q
     |||||||||||||| ||||||||| |||| |||||| ||   | ||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  18151332 cttcaagaatgtttttcaagaaaataaaatacactttttttcacttaggtacctgatgttgcaagtgctccaaatggttctattggtaataatc 18151239  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 99 - 228
Target Start/End: Complemental strand, 12413432 - 12413296
Alignment:
Q  99 aaatcttgttgatgtgcttcaaatgcgattttctgaagatcaacaaattaatgttgttttacaggctgtagc-------atatgaaatgttatatttcaa 191  Q
    ||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||        || ||||| |||| ||||||    
T  12413432 aaatcttgttgttgtgcttcaaatgcgattttctgatgatccacaaattaatgctgtcttacaggctgtagctcaagaggtaagaaatcttatttttcaa 12413333  T
Q  192 gttcaagaatgttttacaagaaaatgaaatgcacttt 228  Q
     |||||||||||||| ||||||||| |||| ||||||    
T  12413332 cttcaagaatgtttttcaagaaaataaaatacacttt 12413296  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 18151627 - 18151545
Alignment:
Q  18 agaaaattcagaaaactttcaaatcaccggtgattctacgaattggaagaatgatacatactgaaaagtgaaagcgtctgaaa 100  Q
    ||||||||||||||| |||||| |||| |  |||||||| ||||||| |||||||||||||| ||||||||||| | ||||||    
T  18151627 agaaaattcagaaaattttcaagtcactgaagattctacaaattggatgaatgatacatactcaaaagtgaaagggcctgaaa 18151545  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 12413627 - 12413554
Alignment:
Q  18 agaaaattcagaaaactttcaaatcaccggtgattctacgaattggaagaatgatacatactgaaaagtgaaag 91  Q
    ||||||||||||||| |||||  |||| |  |||||||| ||||||| |||||||||||||| |||||||||||    
T  12413627 agaaaattcagaaaattttcacgtcactgaagattctacaaattggacgaatgatacatactcaaaagtgaaag 12413554  T

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