View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3208_low_17 (Length: 297)
Name: NF3208_low_17
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3208_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 37556384 - 37556653
Alignment:
| Q |
1 |
gttttagagagaatatggcagatttcttagaatcggagctactgatagacattgaagtaggacttggccctgctggagaactcagatatccttcttatgc |
100 |
Q |
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| T |
37556384 |
gttttagagagaatatggcagatttcttagaatcggagctactgatagacattgaagtaggacttggccctgctggagaactcagatatccttcttatgc |
37556483 |
T |
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| Q |
101 |
agaatctctaggctgggtatttcctggtattggagaatttaatgtgagtttgtgaattttttgctataggaatttgtgcacagttccacataacattgt- |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| ||||||||| |
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| T |
37556484 |
agaatctctaggctgggtatttcctggtattggagaatttaatgtgagtttgtgaattttttgctgtagaaatttgtgcaaagttccacgtaacattgtg |
37556583 |
T |
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| Q |
200 |
atgaaaacaaatcgactcggatcctctctcacggagcagcaaacaatattaagagt-aaaaagtgctatc |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
37556584 |
ttgaaaacaaatcgactcggatcctctctcacggagcagcaaacaataataagagtaaaaaagtgctatc |
37556653 |
T |
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