View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3208_low_2 (Length: 606)
Name: NF3208_low_2
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3208_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 285 - 574
Target Start/End: Original strand, 45545540 - 45545829
Alignment:
| Q |
285 |
cagggtactcagattcaagcaactatgtttaatgatgctgcaaggaagttttatgacaaatttgctatgggaaaggtgtattacatttcaaagggatctt |
384 |
Q |
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| T |
45545540 |
cagggtactcagattcaagcaactatgtttaatgatgctgcaaggaagttttatgacaaatttgctatgggaaaggtgtattacatttcaaagggatctt |
45545639 |
T |
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| Q |
385 |
tgaaagttgctaacaaaaatttcaaaactgtggcaaacgattatgaaatgacattgaatgagaattctgaggtggaagaggttgccaatgaagctgcttt |
484 |
Q |
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| T |
45545640 |
tgaaagttgctaacaaaaatttcaaaactgtggtaaacgattatgaaatgacattgaatgagaattctgaggtggaagaggttgccaatgaagctgcttt |
45545739 |
T |
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| Q |
485 |
tgttccagagactaaattcaattttgtcccaattgatcagttgggtccttacgtgaataagtctgagcttgttggtgagtgtttgttaga |
574 |
Q |
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| T |
45545740 |
tgttccagagactaaattcaattttgtcccaattgatcagttgggtccttatgtgaataagtctgagcttgttggtgagtgtttgttaga |
45545829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 45545265 - 45545457
Alignment:
| Q |
18 |
ctgctcctgcgagattggccatgactcgtagagtgcgtcctcttgtttcactgaatccttatatgggtggttggacaattaaggtcagtgtcacaagcaa |
117 |
Q |
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| T |
45545265 |
ctgctcctgcgagattggccatgacccgtagagtgcgtcctcttgtttcactgaatccttatatgggtggttggacaattaaggtcagtgtcacaagcaa |
45545364 |
T |
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| Q |
118 |
aggaactatgcgtacctataagaatgctagaggagaaggttgtgtattcaatgttgaactgaccgatgaagatgtaaggaacaggatatttga |
210 |
Q |
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| T |
45545365 |
aggaactatgcgtacctataagaatgctagaggagaaggttgtgtattcaatgttgaactgactgatgaagatgtaaggaacagaatatttga |
45545457 |
T |
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