View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3208_low_20 (Length: 247)

Name: NF3208_low_20
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3208_low_20
NF3208_low_20
[»] chr3 (31 HSPs)
chr3 (171-235)||(10756369-10756433)
chr3 (21-90)||(7824454-7824523)
chr3 (21-90)||(29689482-29689551)
chr3 (21-90)||(54158325-54158394)
chr3 (22-90)||(43247650-43247718)
chr3 (21-87)||(9349679-9349745)
chr3 (21-90)||(36228994-36229063)
chr3 (21-90)||(54151681-54151750)
chr3 (22-90)||(51665925-51665993)
chr3 (21-84)||(55018040-55018103)
chr3 (24-90)||(3112995-3113061)
chr3 (21-87)||(7958628-7958694)
chr3 (21-90)||(28844563-28844633)
chr3 (21-90)||(4601484-4601553)
chr3 (21-90)||(52500897-52500966)
chr3 (6-90)||(55320400-55320483)
chr3 (22-90)||(47635005-47635073)
chr3 (24-90)||(33334670-33334736)
chr3 (49-90)||(41377666-41377707)
chr3 (21-90)||(42392805-42392874)
chr3 (37-89)||(38257304-38257356)
chr3 (24-90)||(43775285-43775351)
chr3 (37-87)||(53182808-53182858)
chr3 (21-89)||(35461480-35461548)
chr3 (21-88)||(1778910-1778977)
chr3 (39-90)||(32001424-32001475)
chr3 (37-90)||(475281-475333)
chr3 (53-90)||(2590810-2590847)
chr3 (36-89)||(40756728-40756781)
chr3 (25-81)||(448884-448940)
chr3 (22-74)||(43023695-43023747)
[»] chr5 (19 HSPs)
chr5 (21-90)||(13204016-13204085)
chr5 (21-90)||(21018282-21018351)
chr5 (21-90)||(31909385-31909454)
chr5 (21-90)||(2971043-2971112)
chr5 (25-90)||(29265938-29266003)
chr5 (34-90)||(32143414-32143470)
chr5 (34-90)||(35317697-35317753)
chr5 (34-90)||(4824939-4824995)
chr5 (23-90)||(21112110-21112177)
chr5 (24-90)||(23262606-23262672)
chr5 (22-90)||(12257416-12257484)
chr5 (25-87)||(6021055-6021117)
chr5 (40-87)||(40177702-40177749)
chr5 (21-87)||(1191543-1191609)
chr5 (32-90)||(2786341-2786398)
chr5 (25-90)||(35545996-35546061)
chr5 (20-87)||(17984745-17984812)
chr5 (37-89)||(3386894-3386946)
chr5 (21-81)||(27721490-27721550)
[»] chr4 (33 HSPs)
chr4 (21-90)||(53457883-53457952)
chr4 (21-90)||(26424858-26424927)
chr4 (21-90)||(34739339-34739408)
chr4 (21-90)||(43139906-43139975)
chr4 (21-90)||(45874114-45874183)
chr4 (22-90)||(1174011-1174079)
chr4 (21-90)||(12735490-12735559)
chr4 (21-90)||(28798388-28798457)
chr4 (22-90)||(238458-238526)
chr4 (24-90)||(12867903-12867969)
chr4 (21-90)||(18257388-18257457)
chr4 (21-90)||(19849503-19849572)
chr4 (21-90)||(23417483-23417552)
chr4 (18-90)||(1966606-1966678)
chr4 (21-89)||(55214711-55214779)
chr4 (25-86)||(23710337-23710398)
chr4 (21-90)||(54768432-54768501)
chr4 (22-90)||(19673929-19673997)
chr4 (22-86)||(19814165-19814229)
chr4 (6-90)||(31015026-31015110)
chr4 (21-90)||(19225318-19225387)
chr4 (37-90)||(55400303-55400356)
chr4 (23-90)||(29581044-29581110)
chr4 (34-81)||(39807916-39807963)
chr4 (21-90)||(22608044-22608113)
chr4 (22-66)||(2075565-2075609)
chr4 (22-90)||(33770628-33770696)
chr4 (22-90)||(37620677-37620745)
chr4 (18-90)||(52171990-52172062)
chr4 (34-87)||(23532119-23532172)
chr4 (21-90)||(24417878-24417947)
chr4 (49-90)||(50347329-50347370)
chr4 (21-90)||(11278041-11278106)
[»] chr2 (27 HSPs)
chr2 (22-90)||(23839919-23839987)
chr2 (21-90)||(10639606-10639675)
chr2 (21-90)||(33083554-33083623)
chr2 (21-90)||(37197610-37197679)
chr2 (21-90)||(26605683-26605752)
chr2 (36-90)||(29659218-29659272)
chr2 (21-90)||(11459774-11459843)
chr2 (21-90)||(19537366-19537435)
chr2 (37-90)||(34460444-34460497)
chr2 (37-90)||(42578243-42578296)
chr2 (37-90)||(45125165-45125218)
chr2 (21-87)||(11708737-11708803)
chr2 (21-90)||(19048813-19048882)
chr2 (21-90)||(39535534-39535603)
chr2 (22-87)||(43684129-43684194)
chr2 (25-90)||(44181887-44181952)
chr2 (22-90)||(27137918-27137986)
chr2 (22-90)||(43778468-43778536)
chr2 (35-90)||(33001775-33001830)
chr2 (21-90)||(4851379-4851448)
chr2 (21-90)||(39831444-39831512)
chr2 (21-90)||(7275886-7275955)
chr2 (22-90)||(11816550-11816619)
chr2 (26-90)||(21312269-21312331)
chr2 (24-87)||(7349160-7349223)
chr2 (47-90)||(38440197-38440240)
chr2 (37-90)||(19816295-19816348)
[»] scaffold1348 (1 HSPs)
scaffold1348 (21-90)||(862-931)
[»] scaffold0119 (2 HSPs)
scaffold0119 (21-90)||(13951-14020)
scaffold0119 (21-90)||(19631-19700)
[»] scaffold0032 (1 HSPs)
scaffold0032 (21-90)||(56540-56609)
[»] chr8 (33 HSPs)
chr8 (21-90)||(6602518-6602587)
chr8 (21-90)||(6677971-6678040)
chr8 (21-90)||(32333173-32333242)
chr8 (21-90)||(35779497-35779566)
chr8 (23-90)||(1340-1407)
chr8 (23-90)||(1078648-1078715)
chr8 (20-87)||(7813380-7813447)
chr8 (20-90)||(13891148-13891218)
chr8 (21-90)||(70523-70592)
chr8 (21-90)||(28817315-28817384)
chr8 (21-90)||(42885233-42885302)
chr8 (20-90)||(7792719-7792789)
chr8 (24-90)||(42192639-42192705)
chr8 (20-90)||(45264640-45264710)
chr8 (23-90)||(10963242-10963307)
chr8 (34-89)||(9292090-9292145)
chr8 (21-90)||(4530982-4531051)
chr8 (34-87)||(31532128-31532181)
chr8 (18-90)||(31695269-31695341)
chr8 (22-90)||(9775042-9775110)
chr8 (36-90)||(39303383-39303438)
chr8 (39-89)||(20269607-20269657)
chr8 (39-89)||(21056236-21056286)
chr8 (49-90)||(29425438-29425479)
chr8 (21-90)||(31969720-31969789)
chr8 (23-83)||(5385399-5385459)
chr8 (22-90)||(39435342-39435410)
chr8 (21-89)||(40911280-40911347)
chr8 (22-89)||(41849233-41849299)
chr8 (52-90)||(12534720-12534758)
chr8 (20-62)||(18386766-18386808)
chr8 (21-90)||(3822455-3822524)
chr8 (34-90)||(33731464-33731520)
[»] chr7 (36 HSPs)
chr7 (21-90)||(4106797-4106866)
chr7 (21-90)||(4107368-4107437)
chr7 (21-90)||(23358244-23358313)
chr7 (21-90)||(31770532-31770601)
chr7 (21-87)||(44083999-44084065)
chr7 (21-90)||(25546275-25546344)
chr7 (25-90)||(38781208-38781273)
chr7 (21-90)||(40058297-40058366)
chr7 (21-90)||(47570718-47570787)
chr7 (22-90)||(25112247-25112315)
chr7 (6-86)||(38033773-38033853)
chr7 (37-90)||(41183890-41183943)
chr7 (21-90)||(47250251-47250320)
chr7 (21-90)||(48146812-48146881)
chr7 (35-90)||(8439151-8439206)
chr7 (15-90)||(40657582-40657657)
chr7 (36-90)||(2146710-2146764)
chr7 (40-90)||(19630668-19630718)
chr7 (25-90)||(11355886-11355951)
chr7 (22-90)||(31288224-31288292)
chr7 (21-90)||(7162790-7162857)
chr7 (24-90)||(39513983-39514049)
chr7 (21-90)||(5587339-5587408)
chr7 (21-90)||(5592300-5592369)
chr7 (21-90)||(47557840-47557909)
chr7 (40-87)||(15634882-15634929)
chr7 (22-83)||(27229484-27229546)
chr7 (34-80)||(34763514-34763560)
chr7 (21-90)||(42081619-42081685)
chr7 (37-90)||(5772819-5772872)
chr7 (21-90)||(43203365-43203434)
chr7 (22-90)||(10220473-10220540)
chr7 (22-89)||(43753754-43753822)
chr7 (40-90)||(48444152-48444202)
chr7 (25-90)||(35309917-35309982)
chr7 (34-90)||(29484755-29484811)
[»] chr1 (31 HSPs)
chr1 (21-90)||(5055788-5055857)
chr1 (21-90)||(28455933-28456002)
chr1 (21-90)||(32007133-32007202)
chr1 (21-90)||(39276409-39276478)
chr1 (21-90)||(41039303-41039372)
chr1 (21-90)||(45813011-45813080)
chr1 (21-90)||(41808261-41808330)
chr1 (21-90)||(48660081-48660150)
chr1 (35-90)||(192488-192543)
chr1 (25-90)||(20811-20876)
chr1 (21-90)||(7059526-7059595)
chr1 (21-90)||(26032860-26032929)
chr1 (21-90)||(41761411-41761480)
chr1 (21-86)||(50106200-50106265)
chr1 (22-89)||(35945857-35945924)
chr1 (37-90)||(13109845-13109898)
chr1 (21-90)||(46447373-46447446)
chr1 (21-90)||(4066020-4066089)
chr1 (21-90)||(29994383-29994452)
chr1 (21-90)||(35110099-35110168)
chr1 (19-67)||(16770179-16770227)
chr1 (25-89)||(21939005-21939069)
chr1 (18-90)||(49783763-49783835)
chr1 (23-90)||(778635-778702)
chr1 (35-90)||(11688336-11688391)
chr1 (24-90)||(3716424-3716490)
chr1 (35-90)||(5943754-5943809)
chr1 (36-90)||(9886892-9886946)
chr1 (6-87)||(7275725-7275806)
chr1 (37-90)||(13097379-13097432)
chr1 (37-89)||(26264537-26264589)
[»] scaffold0044 (1 HSPs)
scaffold0044 (21-90)||(9973-10042)
[»] chr6 (20 HSPs)
chr6 (21-90)||(4464186-4464255)
chr6 (21-90)||(33704275-33704344)
chr6 (34-90)||(35218640-35218696)
chr6 (20-90)||(21037349-21037418)
chr6 (25-90)||(29009650-29009715)
chr6 (21-90)||(33621553-33621622)
chr6 (21-90)||(361070-361139)
chr6 (21-90)||(28322991-28323060)
chr6 (34-90)||(19145542-19145598)
chr6 (36-90)||(28592128-28592182)
chr6 (49-90)||(16518508-16518549)
chr6 (22-90)||(21000752-21000820)
chr6 (23-90)||(2959210-2959277)
chr6 (28-83)||(9454732-9454787)
chr6 (21-64)||(11572067-11572110)
chr6 (36-90)||(24619079-24619133)
chr6 (36-90)||(32289419-32289473)
chr6 (32-90)||(32353941-32353999)
chr6 (37-90)||(22576256-22576309)
chr6 (34-90)||(11456045-11456101)
[»] scaffold0352 (1 HSPs)
scaffold0352 (8-90)||(8943-9025)
[»] scaffold0053 (1 HSPs)
scaffold0053 (21-90)||(22222-22291)
[»] scaffold0038 (1 HSPs)
scaffold0038 (21-90)||(114311-114380)
[»] scaffold0067 (1 HSPs)
scaffold0067 (22-90)||(34878-34947)
[»] scaffold0631 (1 HSPs)
scaffold0631 (57-90)||(4413-4446)
[»] scaffold0360 (1 HSPs)
scaffold0360 (49-89)||(14592-14632)


Alignment Details
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 10756433 - 10756369
Alignment:
Q  171 gaaggattatgcattgtaaatatatatgctataagtactaattcgacattttgcctattcatatt 235  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10756433 gaaggattatgcattgtaaaaatatatgctataagtactaattcgacattttgcctattcatatt 10756369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 7824523 - 7824454
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  7824523 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 7824454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 29689551 - 29689482
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  29689551 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 29689482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 54158325 - 54158394
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  54158325 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 54158394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 43247718 - 43247650
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  43247718 gggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 43247650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 9349745 - 9349679
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaa 87  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  9349745 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaa 9349679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 36229063 - 36228994
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  36229063 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcaatggattaccacttcatctaagac 36228994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 54151750 - 54151681
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||    
T  54151750 cgggttcgaacccgggacctcacagttgtgtatgagtttattttcagtggattaccacttcatctaagac 54151681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 51665993 - 51665925
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| | ||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  51665993 gggttcgaacccgggaccttacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 51665925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 55018103 - 55018040
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatc 84  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  55018103 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatc 55018040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 3113061 - 3112995
Alignment:
Q  24 gttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||| | |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  3113061 gttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 3112995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 7958628 - 7958694
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaa 87  Q
    |||||||||| | |||||||||||||||||||| |||||||||| || |||||||||||||||||||    
T  7958628 cgggttcgaacccgggacctcacagttatgtgtaagtttatttttagtggattaccacttcatctaa 7958694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 28844563 - 28844633
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagttta-ttttcaggggattaccacttcatctaagac 90  Q
    |||||||||| |||| ||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||    
T  28844563 cgggttcgaacctggaacctcacagttgtgtgtgagtttatttttcagtggattaccacttcatctaagac 28844633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 4601484 - 4601553
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | || ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  4601484 cgggttcgaacccggaacctcacagttgtgtgtgagtttattttcagtggattaccagttcatctaagac 4601553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 52500897 - 52500966
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| |||  ||||||||||| |||||||||||||||||||  |||||||||||||||||||||    
T  52500897 cgggttcgaacctgaaacctcacagttgtgtgtgagtttattttcagtagattaccacttcatctaagac 52500966  T

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Target: chr3; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 55320483 - 55320400
Alignment:
Q  6 tcggacattataattcgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||| | ||||||| |||| ||| |||| |||||| |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  55320483 tcggacgtcataattcaggtttgaacctgg-acctcatagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 55320400  T

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Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 47635073 - 47635005
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||  ||||||| ||||||||||| |||||| ||||||  |||||||||||||||||||||    
T  47635073 gggttcgaatccaggacctcgcagttatgtgtaagtttaatttcagttgattaccacttcatctaagac 47635005  T

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Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 33334670 - 33334736
Alignment:
Q  24 gttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||  ||||| |||||||| ||||||    
T  33334670 gttcgaatccgggacctcacagttgtgtgtgagtttaatttcagtagattatcacttcatataagac 33334736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 41377666 - 41377707
Alignment:
Q  49 tgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  41377666 tgtgtgagtttattttcagcggattaccacttcatctaagac 41377707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 42392874 - 42392805
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||| ||||| | ||||||||||| || |||||||||||| |||||| || |||||||||||||||||||    
T  42392874 cgggctcgaacccgggacctcacaattgtgtgtgagtttaatttcagtggtttaccacttcatctaagac 42392805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 38257356 - 38257304
Alignment:
Q  37 acctcacagttatgtgtgagtttattttcaggggattaccacttcatctaaga 89  Q
    |||||||| || |||||||||||| |||||| |||||||||||||||||||||    
T  38257356 acctcacaattgtgtgtgagtttaatttcagcggattaccacttcatctaaga 38257304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 43775285 - 43775351
Alignment:
Q  24 gttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| || | ||||||||| | | |||||||| |||||| ||||||||||||||||||||||    
T  43775285 gttcgaatccggaatctcacagttgtatttgagtttaatttcagtggattaccacttcatctaagac 43775351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 53182808 - 53182858
Alignment:
Q  37 acctcacagttatgtgtgagtttattttcaggggattaccacttcatctaa 87  Q
    |||||||| ||||||||||||||| ||| ||||| ||||||||||||||||    
T  53182808 acctcacaattatgtgtgagtttaattttaggggtttaccacttcatctaa 53182858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 35461548 - 35461480
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaaga 89  Q
    |||||||||| | || ||||||||||| ||||||||||||||||| |  ||||| || |||||||||||    
T  35461548 cgggttcgaacccggaacctcacagttgtgtgtgagtttattttctgtagattatcatttcatctaaga 35461480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 1778910 - 1778977
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaag 88  Q
    |||||||||| | || |||||||| || ||| ||| ||||||||||  ||||||||||||||||||||    
T  1778910 cgggttcgaacccggaacctcacaattgtgtttgaatttattttcaatggattaccacttcatctaag 1778977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 32001475 - 32001424
Alignment:
Q  39 ctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| ||||||||||||||||||| |  |||||||||||| ||||||    
T  32001475 ctcacagttgtgtgtgagtttattttcagtgatttaccacttcatataagac 32001424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 475333 - 475281
Alignment:
Q  37 acctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||| |||||||||||| || ||| | ||||||||||||||||||||    
T  475333 acctcacagttgtgtgtgagtttaatt-cagtgaattaccacttcatctaagac 475281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 2590847 - 2590810
Alignment:
Q  53 tgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  2590847 tgagtttaatttcagtggattaccacttcatctaagac 2590810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 40756781 - 40756728
Alignment:
Q  36 gacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaaga 89  Q
    ||||||||||||  ||||||||||| ||||||  | ||||||||||||||||||    
T  40756781 gacctcacagttgcgtgtgagtttaatttcagtagtttaccacttcatctaaga 40756728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 448940 - 448884
Alignment:
Q  25 ttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttc 81  Q
    |||||| || ||||||||||||| | |||||||||| ||| || |||||||||||||    
T  448940 ttcgaacctaggacctcacagttgtttgtgagtttaattttagtggattaccacttc 448884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 43023695 - 43023747
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggatta 74  Q
    ||||||||||| || |||||||| ||||||||||||||| ||| || ||||||    
T  43023695 gggttcgaatccggaacctcacatttatgtgtgagtttaatttaagtggatta 43023747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 13204016 - 13204085
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13204016 cgggttcgaacccgggacctcacagttatgtgtgagtttattttcagtggattaccacttcatctaagac 13204085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 21018282 - 21018351
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  21018282 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 21018351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 31909454 - 31909385
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  31909454 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 31909385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 2971043 - 2971112
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| ||| |||||||||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  2971043 cgggttcgaacctgagacctcacagttgtgtgtgagtttattttcggtggattaccacttcatctaagac 2971112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 29265938 - 29266003
Alignment:
Q  25 ttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  29265938 ttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 29266003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 32143470 - 32143414
Alignment:
Q  34 gggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  32143470 gggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 32143414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 35317753 - 35317697
Alignment:
Q  34 gggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  35317753 gggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 35317697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 4824995 - 4824939
Alignment:
Q  34 gggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  4824995 gggacctcacagttgtgtgtgagtttattttcaatggattaccacttcatctaagac 4824939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 21112110 - 21112177
Alignment:
Q  23 ggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||| ||||||||||| |||| ||| ||||||||||||||| |||||||||| |||||||||||    
T  21112110 ggttcgaacctgggacctcaaagttgtgtttgagtttattttcagtggattaccacatcatctaagac 21112177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 23262606 - 23262672
Alignment:
Q  24 gttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||| || | |||| |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  23262606 gttcgaacctagaaccttacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 23262672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 12257416 - 12257484
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| |  |||||||| | || ||||||||||||||||||| ||||||||||||||||||||||    
T  12257416 gggttcgaacccaggacctcataattgtgtgtgagtttattttcagtggattaccacttcatctaagac 12257484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 6021055 - 6021117
Alignment:
Q  25 ttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaa 87  Q
    |||||| | |||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||    
T  6021055 ttcgaacccgggacctctcagttgtgtgtgagtttattttcagtggattaccactttatctaa 6021117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 40177702 - 40177749
Alignment:
Q  40 tcacagttatgtgtgagtttattttcaggggattaccacttcatctaa 87  Q
    |||| ||| ||||||||||||||||||| |||||||||||||||||||    
T  40177702 tcaccgttgtgtgtgagtttattttcagtggattaccacttcatctaa 40177749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 1191609 - 1191543
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaa 87  Q
    |||||||||| | ||||||||||| || |||||||||||| |||||| || |||| |||||||||||    
T  1191609 cgggttcgaacccgggacctcacaattgtgtgtgagtttaatttcagtggcttacaacttcatctaa 1191543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 2786341 - 2786398
Alignment:
Q  32 ctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||||||| ||| |||||||| || ||| ||||||||||||||||||||||    
T  2786341 ctgggacctcacagttgtgtatgagtttaatt-cagtggattaccacttcatctaagac 2786398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 35545996 - 35546061
Alignment:
Q  25 ttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||| |||||||||||||||| | |||| ||||| ||| || |||||| |||||||||||||||    
T  35545996 ttcgaacctgggacctcacagttgtatgtgggtttaatttaagtggattatcacttcatctaagac 35546061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 17984812 - 17984745
Alignment:
Q  20 tcgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaa 87  Q
    ||||||||||| | || ||||||||||| |||||||||||| ||| || || ||| ||||||||||||    
T  17984812 tcgggttcgaacccggaacctcacagttgtgtgtgagtttaattttagtggcttatcacttcatctaa 17984745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 3386946 - 3386894
Alignment:
Q  37 acctcacagttatgtgtgagtttattttcaggggattaccacttcatctaaga 89  Q
    |||||| |||| ||||||| |||| |||||| ||||||||||||| |||||||    
T  3386946 acctcaaagttgtgtgtgaatttaatttcagtggattaccacttcttctaaga 3386894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 27721490 - 27721550
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttc 81  Q
    |||||| ||| | |||||||||||||| | ||||| |||| |||||| |||||||||||||    
T  27721490 cgggtttgaacccgggacctcacagttgtatgtgaatttaatttcagtggattaccacttc 27721550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 53457883 - 53457952
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  53457883 cgggttcgaatccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 53457952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 26424927 - 26424858
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  26424927 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 26424858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 34739339 - 34739408
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  34739339 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 34739408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 43139975 - 43139906
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  43139975 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 43139906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 45874114 - 45874183
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  45874114 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 45874183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 1174011 - 1174079
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  1174011 gggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 1174079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 12735490 - 12735559
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| |  ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  12735490 cgggttcgaacccaggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 12735559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 28798457 - 28798388
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | ||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  28798457 cgggttcgaacccgggaccttacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 28798388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 238526 - 238458
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| | |||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  238526 gggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatcgaagac 238458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 12867903 - 12867969
Alignment:
Q  24 gttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||| |||||| ||||||||| || |||||||||||||||| ||||||||||||||||||||||    
T  12867903 gttcgaacctgggatctcacagttgtgagtgagtttattttcagtggattaccacttcatctaagac 12867969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 18257388 - 18257457
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||  | |||||||||||||| || |||||||||||||||| ||||||||||||||||||||||    
T  18257388 cgggttcgagcccgggacctcacagttgtgcgtgagtttattttcagtggattaccacttcatctaagac 18257457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 19849572 - 19849503
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||  || |||||||||||||||||||    
T  19849572 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcaatggtttaccacttcatctaagac 19849503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 23417552 - 23417483
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | ||||| | |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  23417552 cgggttcgaacccgggactttacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 23417483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 1966606 - 1966678
Alignment:
Q  18 attcgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||| |||||||||  |||||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||    
T  1966606 attcaggttcgaattcgggacctcacagttgtgtgtgagtttaatttcagtggattacaacttcatctaagac 1966678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 55214711 - 55214779
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaaga 89  Q
    |||||||||| | |||||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||    
T  55214711 cgggttcgaacccgggacctcacagttgtgtatgagtttattttcagtggattaccactttatctaaga 55214779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 23710398 - 23710337
Alignment:
Q  25 ttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatcta 86  Q
    |||||| |||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  23710398 ttcgaacctggaacctcacagttacgtgtgagtttaatttcagtggattaccacttcatcta 23710337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 54768501 - 54768432
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| |  ||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||||    
T  54768501 cgggttcgaacccaggacctcacagttgtgtgcgagttttttttcagtggattaccacttcatctaagac 54768432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 19673997 - 19673929
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| | ||||||||||| ||||||| ||||||| |||||| ||||||||||||||| ||||||    
T  19673997 gggttcgaacccgggacctcacaattatgtgcgagtttaatttcagtggattaccacttcatttaagac 19673929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 19814165 - 19814229
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatcta 86  Q
    |||||| || ||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||    
T  19814165 gggttcaaacctgggacctcacaattatgtgtgagtttaatttcagttgattaccacttcatcta 19814229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 31015026 - 31015110
Alignment:
Q  6 tcggacattataattcgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||| || ||||||||||||||   | ||||||||||| |||||||||||| |||||| |  |||||||||||||||||||    
T  31015026 tcggacatcatgattcgggttcgaattcagaacctcacagttgtgtgtgagtttaatttcagtgctttaccacttcatctaagac 31015110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 19225318 - 19225387
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | ||||||||||| || || ||||||||| |||||| || |||||||||||||||||||    
T  19225318 cgggttcgaacccgggacctcacaattgtgcgtgagtttagtttcagtggtttaccacttcatctaagac 19225387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 55400303 - 55400356
Alignment:
Q  37 acctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||| |||| | ||||||||||||||||| ||||||||||||||||||||||    
T  55400303 acctcatagttgtatgtgagtttattttcagtggattaccacttcatctaagac 55400356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 29581110 - 29581044
Alignment:
Q  23 ggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||| | | |||||||||||| |||||||||||| ||| || ||||||||||||||||||||||    
T  29581110 ggttcgaacccgagacctcacagttgtgtgtgagtttaattt-agtggattaccacttcatctaagac 29581044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 39807916 - 39807963
Alignment:
Q  34 gggacctcacagttatgtgtgagtttattttcaggggattaccacttc 81  Q
    |||||||||||||| |||||||||||| |||||| |||||||||||||    
T  39807916 gggacctcacagttgtgtgtgagtttaatttcagtggattaccacttc 39807963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 22608044 - 22608113
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||| |||||||| |||||  ||||||| ||||||||| ||||    
T  22608044 cgggttcgaacccgggacctcacagttgtgtctgagtttaatttcaatggattactacttcatctgagac 22608113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 2075565 - 2075609
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttca 66  Q
    ||||||||| | ||||||||||||||||||||||||||| |||||    
T  2075565 gggttcgaacccgggacctcacagttatgtgtgagtttaatttca 2075609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 33770628 - 33770696
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| | ||||| ||| |||| |||||||||||| |||||| || ||||| |||||||||||||    
T  33770628 gggttcgaacccgggacttcatagttgtgtgtgagtttaatttcagtggtttaccgcttcatctaagac 33770696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 37620677 - 37620745
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| | ||||  |||||| | |||||||||||| |||||| |||||||||||||||| |||||    
T  37620677 gggttcgaacccgggatatcacaggtttgtgtgagtttaatttcagtggattaccacttcatcaaagac 37620745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 52172062 - 52171990
Alignment:
Q  18 attcgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| ||| || | |||||||| || |||||||||||| |||||| |||||||||||| || ||||||    
T  52172062 attcgggtttgaacctagaacctcacaattgtgtgtgagtttaatttcagtggattaccactttatttaagac 52171990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 23532119 - 23532172
Alignment:
Q  34 gggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaa 87  Q
    ||||| |||||||| |||||||||||| |||||| | ||||||||||| |||||    
T  23532119 gggacttcacagttgtgtgtgagtttaatttcagtgaattaccacttcttctaa 23532172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 24417947 - 24417878
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||| | |||||||||||| ||  |||||||| ||| || ||||||||||||| || |||||    
T  24417947 cgggttcgaatccgagacctcacagttgtggatgagtttaattttagtggattaccacttcttccaagac 24417878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 50347370 - 50347329
Alignment:
Q  49 tgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||| |||||| |||||||||| |||||||||||    
T  50347370 tgtgtgagtttaatttcagtggattaccacctcatctaagac 50347329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 11278041 - 11278106
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||| || | ||||||||||||||    ||||||||| |||||| || |||||||||||||||||||    
T  11278041 cgggttcaaacccgggacctcacagtt----gtgagtttaatttcagtggtttaccacttcatctaagac 11278106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 23839919 - 23839987
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  23839919 gggttcgaacctgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 23839987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 10639675 - 10639606
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  10639675 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 10639606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 33083623 - 33083554
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  33083623 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 33083554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 37197679 - 37197610
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  37197679 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 37197610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 26605683 - 26605752
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  26605683 cgggttcgaacccgggacctcacagttgtgtgtgaatttattttcagtggattaccacttcatctaagac 26605752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 29659272 - 29659218
Alignment:
Q  36 gacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  29659272 gacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 29659218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 11459774 - 11459843
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| |||||| |||||||||||  ||||||||||||||||||||||    
T  11459774 cgggttcgaacccgggacctcacagttgtgtgtgtgtttattttcaatggattaccacttcatctaagac 11459843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 19537366 - 19537435
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | || ||||||||||| |||||| |||||||||||| ||||||||||||||||||||||    
T  19537366 cgggttcgaacccggaacctcacagttgtgtgtgtgtttattttcagtggattaccacttcatctaagac 19537435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 34460444 - 34460497
Alignment:
Q  37 acctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  34460444 acctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 34460497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 42578243 - 42578296
Alignment:
Q  37 acctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  42578243 acctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 42578296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 45125218 - 45125165
Alignment:
Q  37 acctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  45125218 acctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 45125165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 11708737 - 11708803
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaa 87  Q
    |||||||||| |  ||||||||||||| |||||| |||||||||||| |||||||||||||||||||    
T  11708737 cgggttcgaacccaggacctcacagttgtgtgtgggtttattttcagtggattaccacttcatctaa 11708803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 19048813 - 19048882
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | ||||||||||| || |||||||||||| |||||| || |||||||||||||||||||    
T  19048813 cgggttcgaacccgggacctcacaattgtgtgtgagtttagtttcagtggtttaccacttcatctaagac 19048882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 39535603 - 39535534
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| | |||||||||| ||| || ||||||||||||||||||||||    
T  39535603 cgggttcgaacccgggacctcacagttttatgtgagtttaatttgagcggattaccacttcatctaagac 39535534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 43684129 - 43684194
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaa 87  Q
    ||||||||| | |||||| |||| |||||||||||||||||||||  |||||||||||||||||||    
T  43684129 gggttcgaacccgggaccccacaattatgtgtgagtttattttcactggattaccacttcatctaa 43684194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 44181952 - 44181887
Alignment:
Q  25 ttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||| |||| ||||||||| ||||||||||||||||||| |||||| ||||| |||||||||    
T  44181952 ttcgaatccgggatctcacagttgtgtgtgagtttattttcagtggattatcacttaatctaagac 44181887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 27137986 - 27137918
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| | ||||||| |||||| | |||||||||| |||||| ||||||||||||||||||||||    
T  27137986 gggttcgaacccgggaccttacagttttatgtgagtttaatttcagtggattaccacttcatctaagac 27137918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 43778536 - 43778468
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| ||  ||| |||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  43778536 gggttcgaacctaagacttcacagttgtgtgtgagtttattttcattggattaccacttcatctaagac 43778468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 33001775 - 33001830
Alignment:
Q  35 ggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||||||| |||||||||| |||||| ||||||||| ||||||||||||    
T  33001775 ggacctcacagttatatgtgagtttaatttcagtggattaccatttcatctaagac 33001830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 4851379 - 4851448
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||| || | |||||||||||||| |||||||||||| ||| || |||||||||||||||| |||||    
T  4851379 cgggttcaaacccgggacctcacagttgtgtgtgagtttaattttagtggattaccacttcatccaagac 4851448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 39831512 - 39831444
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | ||||||||||| || |||||||||||| |||||| || |||||||||||||||||||    
T  39831512 cgggttcgaacc-gggacctcacaattgtgtgtgagtttaatttcagtggtttaccacttcatctaagac 39831444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 7275955 - 7275886
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||| | |||| ||| |  ||||||||||||||||||||||    
T  7275955 cgggttcgaacccgggacctcacagttgtgtgtaaatttaattttaatggattaccacttcatctaagac 7275886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 11816619 - 11816550
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagttt-attttcaggggattaccacttcatctaagac 90  Q
    ||||||||| | || ||||||||||| | ||||||||| | |||||| ||||||||||||||||||||||    
T  11816619 gggttcgaacccggaacctcacagttgtatgtgagttttaatttcagtggattaccacttcatctaagac 11816550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 21312269 - 21312331
Alignment:
Q  26 tcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||| ||||||||||||| ||  ||||||||||||||| || | ||||||||||||||||||||    
T  21312269 tcgaacctgggacctcacaatt--gtgtgagtttatttttagtgaattaccacttcatctaagac 21312331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 7349160 - 7349223
Alignment:
Q  24 gttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaa 87  Q
    ||||||||| | |||||||||  |||||||||||||| ||| || |||| ||||||||||||||    
T  7349160 gttcgaatccgagacctcacaactatgtgtgagtttaattttagtggatcaccacttcatctaa 7349223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 38440240 - 38440197
Alignment:
Q  47 tatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||||| ||| || ||||||||||||||||||||||    
T  38440240 tatgtgtgagtttaattttagtggattaccacttcatctaagac 38440197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 19816295 - 19816348
Alignment:
Q  37 acctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||| ||||| ||| |||||||||||||||  |||||| ||||||||||||||    
T  19816295 acctcgcagttgtgtatgagtttattttcagtagattacaacttcatctaagac 19816348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1348 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 931 - 862
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  931 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 14020 - 13951
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  14020 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 13951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 19700 - 19631
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  19700 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 19631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 56540 - 56609
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  56540 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 56609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 6602587 - 6602518
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  6602587 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 6602518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 6678040 - 6677971
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  6678040 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 6677971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 32333173 - 32333242
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  32333173 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 32333242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 35779566 - 35779497
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  35779566 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 35779497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 1407 - 1340
Alignment:
Q  23 ggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  1407 ggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 1340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 1078715 - 1078648
Alignment:
Q  23 ggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  1078715 ggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 1078648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 7813380 - 7813447
Alignment:
Q  20 tcgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaa 87  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  7813380 tcgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaa 7813447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 13891148 - 13891218
Alignment:
Q  20 tcgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||| || ||||||||||||| ||||||||||||||||||| || |||||||||||||||||||    
T  13891148 tcgggttcgaacctaggacctcacagttgtgtgtgagtttattttcagtggtttaccacttcatctaagac 13891218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 70592 - 70523
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||| ||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  70592 cgggtttgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 70523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 28817315 - 28817384
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  28817315 cgggttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 28817384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 42885233 - 42885302
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  42885233 cgggttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 42885302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 7792719 - 7792789
Alignment:
Q  20 tcgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||| | |||| ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||    
T  7792719 tcgggttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattactacttcatctaagac 7792789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 42192705 - 42192639
Alignment:
Q  24 gttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||| | |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  42192705 gttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 42192639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 45264710 - 45264640
Alignment:
Q  20 tcgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||| | |||||||||||||| |||||||||||| |||||| ||||||||||||| ||||||||    
T  45264710 tcgggttcgaacccgggacctcacagttttgtgtgagtttaatttcagtggattaccacttcctctaagac 45264640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 10963307 - 10963242
Alignment:
Q  23 ggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||| | ||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||    
T  10963307 ggttcgaacccgggacctcacagtt--gtgtgagtttattttcagtggattaccacttcatctaagac 10963242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 9292090 - 9292145
Alignment:
Q  34 gggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaaga 89  Q
    ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  9292090 gggacttcacagttgtgtgtgagtttattttcagtggattaccacttcatctaaga 9292145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 4531051 - 4530982
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||| | |||||||||||| |||||| || |||||||||||||||||||    
T  4531051 cgggttcgaacccgggacctcacagctgtgtgtgagtttaatttcagtggtttaccacttcatctaagac 4530982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 31532181 - 31532128
Alignment:
Q  34 gggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaa 87  Q
    |||||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  31532181 gggacctcacagttgtgtgtgagtttaatttcagtggattaccacttcatctaa 31532128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 31695341 - 31695269
Alignment:
Q  18 attcgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||| |||||| ||||||||||||| || |||||||||||| |||||  || |||||||||||||||||||    
T  31695341 attcggattcgaacctgggacctcacaattgtgtgtgagtttaatttcaatggtttaccacttcatctaagac 31695269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 9775110 - 9775042
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| | || |||||||||||||||||||||||| ||| |  ||||||| ||||||||||||||    
T  9775110 gggttcgaacccggaacctcacagttatgtgtgagtttaatttgaatggattacaacttcatctaagac 9775042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 39303383 - 39303438
Alignment:
Q  36 gacctcacagttatgtgtgagttt-attttcaggggattaccacttcatctaagac 90  Q
    |||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||    
T  39303383 gacctcacagttgtgtgtgagttttaatttcagtggattaccacttcatctaagac 39303438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 20269607 - 20269657
Alignment:
Q  39 ctcacagttatgtgtgagtttattttcaggggattaccacttcatctaaga 89  Q
    ||||||||| ||||||||||||||||||  ||||||||| |||||||||||    
T  20269607 ctcacagttgtgtgtgagtttattttcaatggattaccatttcatctaaga 20269657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 21056236 - 21056286
Alignment:
Q  39 ctcacagttatgtgtgagtttattttcaggggattaccacttcatctaaga 89  Q
    ||||||||| ||||||||||||||||||  ||||||||| |||||||||||    
T  21056236 ctcacagttgtgtgtgagtttattttcaatggattaccatttcatctaaga 21056286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 29425438 - 29425479
Alignment:
Q  49 tgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  29425438 tgtgtgagtttaatttcagtggattaccacttcatctaagac 29425479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 31969789 - 31969720
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||   ||||||||| |||| ||||||| |||| |||||| || |||||||||||||||||||    
T  31969789 cgggttcgaacacgggacctcaaagttgtgtgtgaatttaatttcagtggtttaccacttcatctaagac 31969720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 5385399 - 5385459
Alignment:
Q  23 ggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcat 83  Q
    |||||||| | |||||||||||||| |||||||||||| |||||| |  ||||||||||||    
T  5385399 ggttcgaacccgggacctcacagttgtgtgtgagtttaatttcagtgatttaccacttcat 5385459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 39435342 - 39435410
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| | | |||||||||||| |||||||||||| |||  | ||||||| ||||||||||||||    
T  39435342 gggttcgaacccgagacctcacagttgtgtgtgagtttaatttatgtggattacgacttcatctaagac 39435410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 40911280 - 40911347
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaaga 89  Q
    |||||||||| | |||||||||||  | |||||||||||| |||||| || ||||||||||||||||||    
T  40911280 cgggttcgaacc-gggacctcacaactgtgtgtgagtttaatttcagtggcttaccacttcatctaaga 40911347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 41849299 - 41849233
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaaga 89  Q
    ||||||||||| || ||||||| ||| |||||||||||| ||||| | |||||||| |||||||||||    
T  41849299 gggttcgaatccggaacctcactgttgtgtgtgagtttaatttca-gtgattaccatttcatctaaga 41849233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 12534758 - 12534720
Alignment:
Q  52 gtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  12534758 gtgagtttattttcagtagattaccacttcatctaagac 12534720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 18386766 - 18386808
Alignment:
Q  20 tcgggttcgaatctgggacctcacagttatgtgtgagtttatt 62  Q
    ||||||||||| | |||||||||||||| ||||||||||||||    
T  18386766 tcgggttcgaacccgggacctcacagttgtgtgtgagtttatt 18386808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 3822455 - 3822524
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| |  ||| ||||||||| |||||||||||| ||| || | ||||||||||| ||||||||    
T  3822455 cgggttcgaacccaggatctcacagttgtgtgtgagtttaattttagtgaattaccacttcttctaagac 3822524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 33731520 - 33731464
Alignment:
Q  34 gggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||| ||||| |||||||||||| ||| || || |||||||||| ||||||||    
T  33731520 gggacctcccagttgtgtgtgagtttaattttagtggtttaccacttcttctaagac 33731464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 4106797 - 4106866
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  4106797 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 4106866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 4107368 - 4107437
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  4107368 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 4107437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 23358244 - 23358313
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  23358244 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 23358313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 31770601 - 31770532
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  31770601 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 31770532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 44083999 - 44084065
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaa 87  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  44083999 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaa 44084065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 25546344 - 25546275
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||| |||||||||||||| |||||||||||| |||||| || |||||||||||||||||||    
T  25546344 cgggttcgaatccgggacctcacagttgtgtgtgagtttaatttcagtggtttaccacttcatctaagac 25546275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 38781273 - 38781208
Alignment:
Q  25 ttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  38781273 ttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 38781208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 40058297 - 40058366
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||    
T  40058297 cgggttcgaacccgggacctcacagttgtgtatgagtttattttcagtggattaccacttcatctaagac 40058366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 47570787 - 47570718
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  47570787 cgggttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 47570718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 25112315 - 25112247
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| | |||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||    
T  25112315 gggttcgaacccgggacctcacagttgtgtgtgggtttattttcagtggattaccacttcatctaagac 25112247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 38033773 - 38033853
Alignment:
Q  6 tcggacattataattcgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatcta 86  Q
    ||||||||| | || ||||||| |||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||    
T  38033773 tcggacattgtgatccgggttcaaatccgggacctcacagttgtgtgtgagtttattttcagtggagtaccacttcatcta 38033853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 41183890 - 41183943
Alignment:
Q  37 acctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  41183890 acctcacagttatgtgtgagtttattttcagtggattatcacttcatctaagac 41183943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 47250320 - 47250251
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| |||||| |||  |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  47250320 cgggttcgaacctgggatctcttagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 47250251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 48146812 - 48146881
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| |||||||||| |||||||  ||||||||||||||||||||||    
T  48146812 cgggttcgaacccgggacctcacagttgtgtgtgagttaattttcattggattaccacttcatctaagac 48146881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 8439151 - 8439206
Alignment:
Q  35 ggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  8439151 ggacctcacagttgtgtgtgaatttattttcagtggattaccacttcatctaagac 8439206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 40657582 - 40657657
Alignment:
Q  15 ataattcgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||| ||| ||||||||||| ||||||| ||||||||| ||||||| |||||| |||||| |||||||||||||||    
T  40657582 ataactcgagttcgaatctgagacctcatagttatgtgcgagtttaatttcagtggattatcacttcatctaagac 40657657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 2146710 - 2146764
Alignment:
Q  36 gacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||| |||||| |||||||||||| ||||||||||||||||||||||    
T  2146710 gacctcacagttgtgtgtgggtttattttcagtggattaccacttcatctaagac 2146764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 19630718 - 19630668
Alignment:
Q  40 tcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  19630718 tcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 19630668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 11355886 - 11355951
Alignment:
Q  25 ttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||| | |||| ||||||||| |||||||||||| |||||| ||||||||||||||||||||||    
T  11355886 ttcgaacccgggatctcacagttgtgtgtgagtttaatttcagtggattaccacttcatctaagac 11355951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 31288292 - 31288224
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||||| | ||||||||| ||||| |||||| |||||| || |||||||||||||||||||    
T  31288292 gggttcgaatctggaatctcacagttgtgtgtaagtttaatttcagtggtttaccacttcatctaagac 31288224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 7162857 - 7162790
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||   ||||||||||| ||  |||||||||||||||||| ||||||||||||||||||||||    
T  7162857 cgggttcgaactcgggacctcacaatt--gtgtgagtttattttcagtggattaccacttcatctaagac 7162790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 39514049 - 39513983
Alignment:
Q  24 gttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||| | ||||||| ||||||||||||||||||| |||| | ||||||||||||||||| ||||    
T  39514049 gttcgaacccgggaccttacagttatgtgtgagtttaatttcggtggattaccacttcatctgagac 39513983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 5587339 - 5587408
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| |  |||||||||| ||| ||||||||||| ||| || ||||||||||||||||||||||    
T  5587339 cgggttcgaacccaggacctcacatttacgtgtgagtttaattttagtggattaccacttcatctaagac 5587408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 5592300 - 5592369
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| |  |||||||||| ||| ||||||||||| ||| || ||||||||||||||||||||||    
T  5592300 cgggttcgaacccaggacctcacatttacgtgtgagtttaattttagtggattaccacttcatctaagac 5592369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 47557840 - 47557909
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | || ||||||||||| | |||||||||| |||||| || |||||||||||||||||||    
T  47557840 cgggttcgaacccggaacctcacagttgtatgtgagtttaatttcagtggtttaccacttcatctaagac 47557909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 15634929 - 15634882
Alignment:
Q  40 tcacagttatgtgtgagtttattttcaggggattaccacttcatctaa 87  Q
    |||||||| |||||||||||||||||||  ||||||||||||||||||    
T  15634929 tcacagttgtgtgtgagtttattttcagtagattaccacttcatctaa 15634882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 27229546 - 27229484
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgag-tttattttcaggggattaccacttcat 83  Q
    ||||||||| | |||||||||||||| |||||||| |||| |||||| |||||||||||||||    
T  27229546 gggttcgaacccgggacctcacagttgtgtgtgagttttaatttcagtggattaccacttcat 27229484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 34763514 - 34763560
Alignment:
Q  34 gggacctcacagttatgtgtgagtttattttcaggggattaccactt 80  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||||    
T  34763514 gggacctcacagttgtgtgtgagtttaatttcagtggattaccactt 34763560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 42081685 - 42081619
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| |||| |||||||||||  |||||||||||||||||| | |||||||||| |||||||||    
T  42081685 cgggttcgaacctgg-acctcacagtt--gtgtgagtttattttcagtgaattaccactttatctaagac 42081619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 5772872 - 5772819
Alignment:
Q  37 acctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||| |||||||||||| |||||| || |||||||||||| ||||||    
T  5772872 acctcacagttgtgtgtgagtttaatttcagtggtttaccacttcatttaagac 5772819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 43203365 - 43203434
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | ||||||| |||||| ||||||||||||||| ||| |||||  |||||||| ||||||    
T  43203365 cgggttcgaacccgggaccttacagttgtgtgtgagtttatttacagtggattttcacttcatataagac 43203434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 10220540 - 10220473
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||| |  ||||||||||| |||||||||||| |||||| || |||||| ||||||||||||    
T  10220540 gggttcgaatccgaaacctcacagttttgtgtgagtttaatttcagtggtttacca-ttcatctaagac 10220473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 43753822 - 43753754
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagttt-attttcaggggattaccacttcatctaaga 89  Q
    ||||||||| | || ||||||||||| | ||||||||| | |||||| |||||||||||||||||||||    
T  43753822 gggttcgaacccggaacctcacagttgtatgtgagttttaatttcagtggattaccacttcatctaaga 43753754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 48444202 - 48444152
Alignment:
Q  40 tcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||| ||||| |||||| |||||| | ||||||||||||||||||||    
T  48444202 tcacagttgtgtgtaagtttaatttcagtgaattaccacttcatctaagac 48444152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 35309917 - 35309982
Alignment:
Q  25 ttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||| |||| |||||| || |||| ||||||| |||||| || ||| |||||||||||||||    
T  35309917 ttcgaatccgggatctcacaattgtgtgcgagtttaatttcagtggtttatcacttcatctaagac 35309982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 29484811 - 29484755
Alignment:
Q  34 gggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||| || | |||||||||| |||||| |||||| |||||||| ||||||    
T  29484811 gggacctcacaattgtatgtgagtttaatttcagtggattatcacttcatataagac 29484755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 5055857 - 5055788
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  5055857 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 5055788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 28455933 - 28456002
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  28455933 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 28456002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 32007133 - 32007202
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  32007133 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 32007202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 39276409 - 39276478
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  39276409 cgggttcgaacccgggacctcacagttatgtgtgagtttattttcagtggattaccacttcatttaagac 39276478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 41039372 - 41039303
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  41039372 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 41039303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 45813080 - 45813011
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  45813080 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 45813011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 41808261 - 41808330
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | || ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  41808261 cgggttcgaacccggaacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 41808330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 48660081 - 48660150
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  48660081 cgggttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 48660150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 192488 - 192543
Alignment:
Q  35 ggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  192488 ggacctcacagttgtgtgtgagtttattttcagcggattaccacttcatctaagac 192543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 20811 - 20876
Alignment:
Q  25 ttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||| | |||||||||||||| |||||||||||||||| || ||||||||||||||||||||||    
T  20811 ttcgaacccgggacctcacagttgtgtgtgagtttatttttagtggattaccacttcatctaagac 20876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 7059526 - 7059595
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||||| |||||||||||| |||||||||||| ||| || |||||||||||| |||||||||    
T  7059526 cgggttcgaatctgagacctcacagttgtgtgtgagtttaatttaagtggattaccactttatctaagac 7059595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 26032860 - 26032929
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| |||| ||||||||||| |||||||||||| |||||| |||||||| |||||||||||||    
T  26032860 cgggttcgaacctggaacctcacagttttgtgtgagtttaatttcagtggattaccgcttcatctaagac 26032929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 41761480 - 41761411
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| |  ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  41761480 cgggttcgaacccaggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatccaagac 41761411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 50106265 - 50106200
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatcta 86  Q
    |||||||||| | |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||    
T  50106265 cgggttcgaacccgggacctcacagttatgtgtgagtttattttcagtggattgccatttcatcta 50106200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 35945857 - 35945924
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaaga 89  Q
    ||||||||| | || ||||||||||| ||||||| ||||||||||| |||||||||||||||||||||    
T  35945857 gggttcgaacccggaacctcacagttgtgtgtgaatttattttcagtggattaccacttcatctaaga 35945924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 13109845 - 13109898
Alignment:
Q  37 acctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||||||||||||    
T  13109845 acctcacagttgtgtgtgagtttaatttcagtggattaccacttcatctaagac 13109898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 46447446 - 46447373
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagt----ttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | ||||||||||||||||||||||||    |||||||||| |||||||||| |||||||||||    
T  46447446 cgggttcgaacccgggacctcacagttatgtgtgagtttaattattttcagtggattaccacatcatctaagac 46447373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 4066020 - 4066089
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||||| ||||| ||| || | |||||||||| |||||| | ||||||||||||||||||||    
T  4066020 cgggttcgaatctgagaccttacaattgtatgtgagtttaatttcagtgaattaccacttcatctaagac 4066089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 29994452 - 29994383
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | | ||||||||| || |||||||||||| |||||| || |||||||||||||||||||    
T  29994452 cgggttcgaacccgagacctcacaattgtgtgtgagtttaatttcagtggtttaccacttcatctaagac 29994383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 35110168 - 35110099
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| |  |||||| |||||| |||||||||||| ||| || ||||||||||||||||||||||    
T  35110168 cgggttcgaacccaggaccttacagttgtgtgtgagtttaatttgagaggattaccacttcatctaagac 35110099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 16770227 - 16770179
Alignment:
Q  19 ttcgggttcgaatctgggacctcacagttatgtgtgagtttattttcag 67  Q
    |||| |||| ||||||||||||||||||| |||||||||||||||||||    
T  16770227 ttcgagttcaaatctgggacctcacagttgtgtgtgagtttattttcag 16770179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 21939005 - 21939069
Alignment:
Q  25 ttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaaga 89  Q
    ||||||||  ||||||||||||| |||| ||||||| |||||| || ||||||||||||||||||    
T  21939005 ttcgaatccaggacctcacagttgtgtgcgagtttaatttcagcggtttaccacttcatctaaga 21939069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 49783763 - 49783835
Alignment:
Q  18 attcgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||||| | || ||||||||||| | ||||| |||| |||||| || |||||||||||||||||||    
T  49783763 attcgggttcgaacccggaacctcacagttgtatgtgaatttaatttcagtggtttaccacttcatctaagac 49783835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 778635 - 778702
Alignment:
Q  23 ggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||| || |||||| |||||| |||||||||||| |||||| | ||||||| ||||||||||||    
T  778635 ggttcgaacctaggacctgacagttgtgtgtgagtttaatttcagtgaattaccaattcatctaagac 778702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 11688336 - 11688391
Alignment:
Q  35 ggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||| ||| |||| ||||||||||||||||||| |||||||||||||||| |||||    
T  11688336 ggacttcagagttgtgtgtgagtttattttcagtggattaccacttcatccaagac 11688391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 3716424 - 3716490
Alignment:
Q  24 gttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||| ||| |||||||||||| |||||||||||||||| || |||||  |||||||||| ||||    
T  3716424 gttcgaacctgagacctcacagttgtgtgtgagtttatttttagtggattgtcacttcatcttagac 3716490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 5943754 - 5943809
Alignment:
Q  35 ggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||||| | |||||||||| |||||  |||||| |||||||||||||||    
T  5943754 ggacctcacagttgtttgtgagtttaatttcaatggattatcacttcatctaagac 5943809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 9886946 - 9886892
Alignment:
Q  36 gacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||| ||||||||||||||||||| | |||  | ||||||||||||||||||||    
T  9886946 gacctaacagttatgtgtgagtttaatatcactgaattaccacttcatctaagac 9886892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 7275725 - 7275806
Alignment:
Q  6 tcggacattataattcgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaa 87  Q
    |||||| |||| | |||| |||||| | || || |||||||| ||| |||||||| |||||| || ||||||||||||||||    
T  7275725 tcggacgttatgactcggattcgaacccggaacttcacagttgtgtatgagtttaatttcagtggtttaccacttcatctaa 7275806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 13097379 - 13097432
Alignment:
Q  37 acctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||| | |||||||||| ||| |  ||||||||||||||||||||||    
T  13097379 acctcacagttgtatgtgagtttaattttattggattaccacttcatctaagac 13097432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 26264589 - 26264537
Alignment:
Q  37 acctcacagttatgtgtgagtttattttcaggggattaccacttcatctaaga 89  Q
    ||||||||||| |||||||||||| |||||  | |||| ||||||||||||||    
T  26264589 acctcacagttgtgtgtgagtttaatttcaatgtattatcacttcatctaaga 26264537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 10042 - 9973
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | ||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  10042 cgggttcgaacccgggacctcatagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 9973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 4464186 - 4464255
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| |||||||||||||||| |||||||||||| |||||| || |||||||||||||||||||    
T  4464186 cgggttcgaacctgggacctcacagttgtgtgtgagtttaatttcagtggtttaccacttcatctaagac 4464255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 33704275 - 33704344
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  33704275 cgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatttaagac 33704344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 35218696 - 35218640
Alignment:
Q  34 gggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  35218696 gggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 35218640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 21037349 - 21037418
Alignment:
Q  20 tcgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  21037349 tcgggttcgaatccgg-acctcacagttgtgtgtgagtttattttcagtgaattaccacttcatctaagac 21037418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 29009715 - 29009650
Alignment:
Q  25 ttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||| |||||||||||||||| |||||||||||||||| || | ||||||||||||||||||||    
T  29009715 ttcgaacctgggacctcacagttgtgtgtgagtttatttttagtgaattaccacttcatctaagac 29009650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 33621553 - 33621622
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | |||||||||||||| |||||||||||| |||||| || |||||||||||||||||||    
T  33621553 cgggttcgaacccgggacctcacagttgtgtgtgagtttaatttcagtggtttaccacttcatctaagac 33621622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 361070 - 361139
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | || ||||||||||||| |||||||||| |||||| |||||| |||||||||||||||    
T  361070 cgggttcgaacccggaacctcacagttatatgtgagtttaatttcagtggattaacacttcatctaagac 361139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 28322991 - 28323060
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | ||||||||||| || |||||||||||| |||||| || |||||||||||||||||||    
T  28322991 cgggttcgaacccgggacctcacaattgtgtgtgagtttagtttcagtggtttaccacttcatctaagac 28323060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 19145542 - 19145598
Alignment:
Q  34 gggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||| || ||||||| |||| |||||| ||||||||||||||||||||||    
T  19145542 gggacctcacaattgtgtgtgaatttaatttcagtggattaccacttcatctaagac 19145598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 28592182 - 28592128
Alignment:
Q  36 gacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||| ||||||||||||||||||  ||||||||| || |||||||||    
T  28592182 gacctcacagttgtgtgtgagtttattttcaatggattaccaatttatctaagac 28592128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 16518508 - 16518549
Alignment:
Q  49 tgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||||||||||| ||||||||| ||||||||||||    
T  16518508 tgtgtgagtttattttcagtggattaccatttcatctaagac 16518549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 21000752 - 21000820
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| | ||||||||||| || |||||| ||||| |||||| || |||||||||||||| ||||    
T  21000752 gggttcgaacccgggacctcacaattgtgtgtgggtttaatttcagtggtttaccacttcatctgagac 21000820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 2959210 - 2959277
Alignment:
Q  23 ggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||| | | |||||||||||| |||||||||||| |||| | ||| ||||||||||||| ||||    
T  2959210 ggttcgaacccgagacctcacagttgtgtgtgagtttaatttccgtggaataccacttcatcttagac 2959277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 9454787 - 9454732
Alignment:
Q  28 gaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcat 83  Q
    |||||||  ||||||||||||| |||||||||| |||||| || ||||||||||||    
T  9454787 gaatctgaaacctcacagttatatgtgagtttaatttcagtggtttaccacttcat 9454732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 11572067 - 11572110
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttatttt 64  Q
    |||||||||| | |||||||||||||| ||||||||||||||||    
T  11572067 cgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 11572110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 24619133 - 24619079
Alignment:
Q  36 gacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||| | || |||||||||||| ||||||  |||||||||||||||||||||    
T  24619133 gacctcataattgtgtgtgagtttaatttcagtcgattaccacttcatctaagac 24619079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 32289419 - 32289473
Alignment:
Q  36 gacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||| ||||| |||||||| |||| | |||||||||||||| |||||    
T  32289419 gacctcacagttgtgtgtaagtttattatcagtgaattaccacttcatcaaagac 32289473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 32353999 - 32353941
Alignment:
Q  32 ctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||| |||||||| ||||||||||||||||||   |||||||| || |||||||||    
T  32353999 ctgggacttcacagttgtgtgtgagtttattttcaattgattaccattttatctaagac 32353941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 22576256 - 22576309
Alignment:
Q  37 acctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||||||||||||||||  |||||  | ||||||||||| ||||||||    
T  22576256 acctcacagttatgtgtgagtttgatttcattgtattaccacttcttctaagac 22576309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 11456045 - 11456101
Alignment:
Q  34 gggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||| | || |||||||||||||||  ||  |||||||||||||||||||||    
T  11456045 gggacctcataattgtgtgtgagtttatttctagtcgattaccacttcatctaagac 11456101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 9025 - 8943
Alignment:
Q  8 ggacattataattcgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||| |||| ||||||||||||| || ||||||||||||| |||||||||||| |||||| |  |||||||||||||||||||    
T  9025 ggacgttatgattcgggttcgaacctaggacctcacagttgtgtgtgagtttaatttcagtgatttaccacttcatctaagac 8943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 22222 - 22291
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||  | ||||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||    
T  22222 cgggttcgagcccgggacctcacagttgcgtgtgagtttaatttcagtggattaccacttcatctaagac 22291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 114311 - 114380
Alignment:
Q  21 cgggttcgaatctgggacctcacagttatgtgtgagtttattttcaggggattaccacttcatctaagac 90  Q
    |||||||||| | ||||||||||| || |||||||||||| |||||| || |||||||||||||||||||    
T  114311 cgggttcgaacccgggacctcacaattgtgtgtgagtttagtttcagtggtttaccacttcatctaagac 114380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 34878 - 34947
Alignment:
Q  22 gggttcgaatctgggacctcacagttatgtgtgagttt-attttcaggggattaccacttcatctaagac 90  Q
    |||||||||||  ||||||| ||||| | ||||||||| | |||||| ||||||||||||||||||||||    
T  34878 gggttcgaatccaggacctcgcagttgtatgtgagttttaatttcagtggattaccacttcatctaagac 34947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0631 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 4413 - 4446
Alignment:
Q  57 tttattttcaggggattaccacttcatctaagac 90  Q
    ||||||||||| ||||||||||||||||||||||    
T  4413 tttattttcagtggattaccacttcatctaagac 4446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 14592 - 14632
Alignment:
Q  49 tgtgtgagtttattttcaggggattaccacttcatctaaga 89  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  14592 tgtgtgagtttaatttcagtggattaccacttaatctaaga 14632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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