View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3208_low_25 (Length: 237)
Name: NF3208_low_25
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3208_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5811973 - 5812193
Alignment:
| Q |
1 |
cgataaacatatagaatttcatctccaaaagtttttaatgataagtagannnnnnnnnnnngaaggataatgataagtagattaaattcacacattttta |
100 |
Q |
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| T |
5811973 |
cgataaaca-atagaatttcatctcaaaaagtttctaatgataagtagattttttttttt-gaaggataatgataagtagattaaattcacacattttta |
5812070 |
T |
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| Q |
101 |
taaattttaaaattaaaattatttgatacttctttagtttgataactttagatgaaggtatgatgataatatatataggatagataaatagacacactaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5812071 |
taaattttaaaattaaaattatttgatacttctttagtttgataactttagatgaaggtatgatgataatatatataggatagataaatagacacactaa |
5812170 |
T |
|
| Q |
201 |
tacctgaagcaaggagttgtttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
5812171 |
tacctgaagcaaggagttgtttg |
5812193 |
T |
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