View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3208_low_26 (Length: 232)
Name: NF3208_low_26
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3208_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 11696054 - 11695830
Alignment:
| Q |
1 |
ttcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcattctcaatcttatttgataaaaataaataaa |
100 |
Q |
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| T |
11696054 |
ttcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcattctcaatctcatttcataaaaataaataaa |
11695955 |
T |
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| Q |
101 |
actaaagatgtattttcaagtctgttagaagttataatctctgctgttctaaattagtccattttaagaatggactaatccagtaccgcagagataacaa |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
11695954 |
actaaacatgtattttcaagtctgttagaagttataatctctgctgttctaaattagtccattttaagaatggactaacccagaaccgcagagataacaa |
11695855 |
T |
|
| Q |
201 |
aattgtgtgtttttaagtacctatg |
225 |
Q |
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| |||||||||| |||||||||||| |
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| T |
11695854 |
atttgtgtgtttgtaagtacctatg |
11695830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11797895 - 11797825
Alignment:
| Q |
1 |
ttcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
71 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||| |
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| T |
11797895 |
ttcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataattcatt |
11797825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11701851 - 11701781
Alignment:
| Q |
1 |
ttcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
71 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| ||| |||| |
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| T |
11701851 |
ttcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataatccatt |
11701781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11675958 - 11675888
Alignment:
| Q |
1 |
ttcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
71 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||| ||||||||||| | | |||||||| || ||||| |
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|
| T |
11675958 |
ttcccttgaatcccataatatgataccctctctgccacttccacacctatacaaaacattcataactcatt |
11675888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11684237 - 11684167
Alignment:
| Q |
1 |
ttcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
71 |
Q |
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|
||||||||||| |||||||||||| |||||||||||| ||||||||||| | | |||||||| || ||||| |
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| T |
11684237 |
ttcccttgaatcccataatatgataccctctctgccacttccacacctatacaaaacattcataactcatt |
11684167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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