View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3208_low_4 (Length: 535)
Name: NF3208_low_4
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3208_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 5811950 - 5811426
Alignment:
| Q |
1 |
tccaaaaataaatttttctattttaaaatggttaatgtccacctaatttagtccttttttgagaggtccatattagacacactcaagtttattattcaaa |
100 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5811950 |
tccaacaataaatttttctattctaaaatggttaatgtccacctaatttagtccttttttgagaggtccatattagacacactcaagtttattattcaaa |
5811851 |
T |
|
| Q |
101 |
aatataaataatattctcttgatatttaaatgtgaaaaacggtttgagacaaattagtatttaaattatattatggtctgaatattaagcatcaaatttg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5811850 |
aatagaaataatattctcttgatatttaaatgtgaaaaacggtttgagacaaattagtatttaaattatattatggtctgaatattaagcatcaaatttg |
5811751 |
T |
|
| Q |
201 |
aatatacagcgaaaggtgatttctttgacaaaatctttgagagacgaagctataaccagtctatactgcaacacacttcctagaagcttggcaattgcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5811750 |
aatatacagcgaaaggtgatttctttgacaaaatctttgagagacgaagctataaccagtctatactgcaacacacttcctagaagcttggcaattgcag |
5811651 |
T |
|
| Q |
301 |
acttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5811650 |
acttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccga |
5811551 |
T |
|
| Q |
401 |
atataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaact |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5811550 |
atataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaact |
5811451 |
T |
|
| Q |
501 |
gaaatcggcccgtgctacttctctg |
525 |
Q |
| |
|
||||| || || ||||||||||||| |
|
|
| T |
5811450 |
gaaatgggtccttgctacttctctg |
5811426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 172 - 522
Target Start/End: Complemental strand, 27737094 - 27736748
Alignment:
| Q |
172 |
tatggtctgaatattaagcatcaaatttgaatatacagcgaaaggtgatttctttgacaaaatctttgagagacgaagctataaccagtctatactgcaa |
271 |
Q |
| |
|
|||||||||||| ||| ||||||| | ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
27737094 |
tatggtctgaattttatgcatcaatt----atatacagcgaaaggtgatttctttaacaaaacctttgagagacgaagctataaccaacctatattgcaa |
27736999 |
T |
|
| Q |
272 |
cacacttcctagaagcttggcaattgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctt |
371 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| || ||||||||||| | ||| ||||| ||| |
|
|
| T |
27736998 |
cacacttcccagaagcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaactt |
27736899 |
T |
|
| Q |
372 |
tgtcgagaacttaatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttca |
471 |
Q |
| |
|
|||| || | | ||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||| ||||||| | ||||||||||||||||| |
|
|
| T |
27736898 |
tgtcaagtgcatcatcataaatctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtcccttgacaccttca |
27736799 |
T |
|
| Q |
472 |
aagaaaaactacgtaatgaaatggaaactgaaatcggcccgtgctacttct |
522 |
Q |
| |
|
|||| ||||||||| |||||||||||||| |||| |||||||||||||||| |
|
|
| T |
27736798 |
aagagaaactacgtgatgaaatggaaactaaaataggcccgtgctacttct |
27736748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 203 - 523
Target Start/End: Complemental strand, 32628103 - 32627783
Alignment:
| Q |
203 |
tatacagcgaaaggtgatttctttgacaaaatctttgagagacgaagctataaccagtctatactgcaacacacttcctagaagcttggcaattgcagac |
302 |
Q |
| |
|
||||||||||||||| || | |||||||||| |||||||||| ||||| |||||||| | ||| ||||||||| | | ||||||| ||||||||||| |
|
|
| T |
32628103 |
tatacagcgaaaggtaatatatttgacaaaacctttgagagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagac |
32628004 |
T |
|
| Q |
303 |
ttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaat |
402 |
Q |
| |
|
|| |||||||||| |||| |||||||||| |||||||||| || |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32628003 |
ttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaat |
32627904 |
T |
|
| Q |
403 |
ataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactga |
502 |
Q |
| |
|
||| | | |||||||||||||||||||||||| |||||| | |||||| ||||||||||| |||||||||||||||| | ||||||||| ||||| |
|
|
| T |
32627903 |
atatgatatatttgaacgatctaccgggaaatgacttcaacaccatatttacgtcccttgacattttcaaagaaaaactacttgatgaaatggggactga |
32627804 |
T |
|
| Q |
503 |
aatcggcccgtgctacttctc |
523 |
Q |
| |
|
||| || || |||| |||||| |
|
|
| T |
32627803 |
aatgggtccatgcttcttctc |
32627783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 202 - 522
Target Start/End: Complemental strand, 32704332 - 32704008
Alignment:
| Q |
202 |
atatacagcgaaaggtgatttctttgacaaaatctttgagagacgaagctataaccagtctatactgcaacacacttcctagaagcttggcaattgcaga |
301 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||| | | ||| || ||||| || | |||||||||||||||||| |
|
|
| T |
32704332 |
atatatagcgaaaggtgatttctttgacaaaacttttgagagaagaagccataacaaacatgtacaataaaacactccccataagcttggcaattgcaga |
32704233 |
T |
|
| Q |
302 |
cttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccga- |
400 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| |||||| || | |||||||||||| |||||| |||||||||| ||||||||||||||||| || |
|
|
| T |
32704232 |
tttgggttgctcttatggaccaaacactttgttggcgatctcagatactatcaaggttgtggaaaagatttgtcgagagcttaatcataaatctcctgaa |
32704133 |
T |
|
| Q |
401 |
---atataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaa |
497 |
Q |
| |
|
|||||| |||||||||||||||||||| || || || |||||| | ||||||| |||||| ||||| ||||||||||| |||| |||||||||| |
|
|
| T |
32704132 |
tatatataaggtctttttgaacgatctaccagggaacgacttcaacaatgtatttaggtccctcgacacgttcaaagaaaatctacaggctgaaatggaa |
32704033 |
T |
|
| Q |
498 |
actgaaatcggcccgtgctacttct |
522 |
Q |
| |
|
|| ||||| | || |||||||||| |
|
|
| T |
32704032 |
accgaaatggtaccttgctacttct |
32704008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 285 - 422
Target Start/End: Complemental strand, 32709959 - 32709822
Alignment:
| Q |
285 |
agcttggcaattgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaactta |
384 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| ||||||||||| |||||| | || ||| |||||||||| || ||||||||||||||||| | | |
|
|
| T |
32709959 |
agcttagcaattgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttga |
32709860 |
T |
|
| Q |
385 |
atcataaatctcccgaatataaagtctttttgaacgat |
422 |
Q |
| |
|
||||| ||||||||||||| || ||||| ||||||||| |
|
|
| T |
32709859 |
atcatgaatctcccgaatacaaggtcttcttgaacgat |
32709822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 219 - 522
Target Start/End: Complemental strand, 7293772 - 7293469
Alignment:
| Q |
219 |
atttctttgacaaaatctttgagagacgaagctataaccagtctatactgcaacacacttcctagaagcttggcaattgcagacttgggttgctcttttg |
318 |
Q |
| |
|
|||||||| |||||| | | ||||| ||||| ||||| || || |||| || ||||||||| |||||| | ||||||||||| ||||||| |||| || |
|
|
| T |
7293772 |
atttctttaacaaaacatataagagaggaagccataactagcctctactccagcacacttcccagaagccttgcaattgcagatctgggttgttcttgtg |
7293673 |
T |
|
| Q |
319 |
gaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttgaa |
418 |
Q |
| |
|
||| ||||||||| | ||| | || ||||| |||| |||||| || |||||||| | | || | || || |||||||||||| || ||||||| || |
|
|
| T |
7293672 |
gacaaaacactttgtctgtggtgtcagaaatcatcatggttgtggagaagctttgccaacaattgaaatatgcatctcccgaatacaagatcttttttaa |
7293573 |
T |
|
| Q |
419 |
cgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactgaaatcggcccgtgctac |
518 |
Q |
| |
|
|||||| | || ||||| |||||| || | |||| ||| ||||| | ||| ||| | ||||||| | ||||||| |||||||||| |||| |||||| |
|
|
| T |
7293572 |
cgatctttcagggaatgacttcaacaacatttttaagtcacttgatagctttaaacataaactacttgatgaaatcaaaactgaaatgagcccttgctac |
7293473 |
T |
|
| Q |
519 |
ttct |
522 |
Q |
| |
|
|||| |
|
|
| T |
7293472 |
ttct |
7293469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 7298174 - 7298092
Alignment:
| Q |
291 |
gcaattgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttg |
373 |
Q |
| |
|
||||||||||| || ||||| |||| ||||||||||||||| || ||| | || || ||||||| |||||| || |||||||| |
|
|
| T |
7298174 |
gcaattgcagatttaggttgttcttctggaccaaacactttgtttgtggtatcagatattatcatggttgtggagaagctttg |
7298092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 277 - 493
Target Start/End: Complemental strand, 21943877 - 21943661
Alignment:
| Q |
277 |
ttcctagaagcttggcaattgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcg |
376 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||| ||||| ||| ||||| ||||||||||| || ||||| || ||||| ||||||||||||| |
|
|
| T |
21943877 |
ttcctagaagcttagccgttgcagacttgggttgttcttctggactaaatactttgttggtgatctcggagattataaatgttgtggaaaagctttgtca |
21943778 |
T |
|
| Q |
377 |
agaacttaatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaa |
476 |
Q |
| |
|
||| | |||||| |||||||||||||||| || ||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||| |||||||||||| |
|
|
| T |
21943777 |
agagttgaatcatgaatctcccgaatataaggtatttttgaacgatctacccggaaacgatttcaacaacgtatttaggtcccttgagaccttcaaagaa |
21943678 |
T |
|
| Q |
477 |
aaactacgtaatgaaat |
493 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
21943677 |
aaactttgtaatgaaat |
21943661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 206 - 525
Target Start/End: Original strand, 20115711 - 20116030
Alignment:
| Q |
206 |
acagcgaaaggtgatttctttgacaaaatctttgagagacgaagctataaccagtctatactgcaacacacttcctagaagcttggcaattgcagacttg |
305 |
Q |
| |
|
||||| |||||| |||||| | ||||||||| ||||||| |||| ||||||| || ||||||| | ||| ||||| || ||| |||||||||| |
|
|
| T |
20115711 |
acagcaaaaggtaatttctggggcaaaatcttcgagagacaaagccataaccaacctctactgcagtctatatccaagaagattcgcagttgcagactta |
20115810 |
T |
|
| Q |
306 |
ggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatata |
405 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||| |||| | |||||| ||||||| |||||| |
|
|
| T |
20115811 |
ggttgctcttcaggaccaaacaccttgttggtgatctcagaaattatcaaggttgtggaaaagctttgtatagaattgaatcatgaatctcctgaatatg |
20115910 |
T |
|
| Q |
406 |
aagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactgaaat |
505 |
Q |
| |
|
| |||| ||||||||||||| | ||||| || ||||||| | |||||| |||||||||||||||||||||||| || ||||||| |||||| | |||| |
|
|
| T |
20115911 |
atgtctctttgaacgatctatccggaaacgacttcaacggcatatttaagtcccttgacaccttcaaagaaaagctttctaatgaattggaaaataaaat |
20116010 |
T |
|
| Q |
506 |
cggcccgtgctacttctctg |
525 |
Q |
| |
|
|| || ||||||||||||| |
|
|
| T |
20116011 |
gggtccttgctacttctctg |
20116030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 443
Target Start/End: Original strand, 8028972 - 8029121
Alignment:
| Q |
294 |
attgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaat |
393 |
Q |
| |
|
|||||||| |||||||| |||| ||| ||||||||||| |||||||| |||||| ||||||| | ||||| || ||||| | ||||| |||||| | | |
|
|
| T |
8028972 |
attgcagatttgggttgttcttctgggccaaacactttgttggtgatatctgaagttatcaaattagttgataaactttgccaagaacataatcacgagt |
8029071 |
T |
|
| Q |
394 |
ctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaac |
443 |
Q |
| |
|
|||| ||||| ||||||| |||| ||||| | || |||||||||||| |
|
|
| T |
8029072 |
ctccagaataccaagtcttcatgaatgatcttcaagggaatgatttcaac |
8029121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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