View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3208_low_5 (Length: 527)
Name: NF3208_low_5
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3208_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Complemental strand, 54721586 - 54721085
Alignment:
| Q |
18 |
caaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatggattcggtatgtatatttctacacaaattat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54721586 |
caaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatggattcggtatgtatatttctacacaaattat |
54721487 |
T |
|
| Q |
118 |
tgtactgagaacagtagcttttatcgatgccacataacttattatagttaatacaaatgatgaaaataagttttattattatctttttgcgagacttatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54721486 |
tgtactgagaacagtagcttttatcgatgccacataacttattatagttaatacaaatgatgaaaataagttttattattatctttttgcgagacttatg |
54721387 |
T |
|
| Q |
218 |
agatttgtcatcatcatcatgaagctgatcagcttcatctttcactagtaattgattaactcttccatcaccctcctcagcagcagaactattcagagta |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
54721386 |
agatttgtcatcatcatcatgaagctgatcagcttcatctttcactagtaattgattaactcttccatcac---cctcagcagcagcactattcagagta |
54721290 |
T |
|
| Q |
318 |
ccagcttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaa |
417 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54721289 |
ccaacttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaa |
54721190 |
T |
|
| Q |
418 |
gtgaaacagtactggtttttgccatagtgtacaatatctatcagtaactttatttccttcctatcgttattgttttgcatggaataaaataggcttcatc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54721189 |
gtgaaacagtactggtttttgccatagtgtacaatatctatcagtaactttatttccttcctatcgttattgttttgcatggaataaaataggcttcata |
54721090 |
T |
|
| Q |
518 |
tcact |
522 |
Q |
| |
|
||||| |
|
|
| T |
54721089 |
tcact |
54721085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 225 - 522
Target Start/End: Complemental strand, 54714450 - 54714165
Alignment:
| Q |
225 |
tcatcatcatcatgaagctgatcagcttca---tctttcactagtaattgattaactcttccatcaccctcctcagcagcagaactattcagagtaccag |
321 |
Q |
| |
|
||||||||||||| | |||||||||||||| |||||||| || ||||||||||||||||||||| | |||||||| ||||||||| |||||| |
|
|
| T |
54714450 |
tcatcatcatcatcatgctgatcagcttcaatatctttcaccggt---tgattaactcttccatcacccccggcagcagca---ctattcagaataccag |
54714357 |
T |
|
| Q |
322 |
cttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaagtga |
421 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||| || ||| |
|
|
| T |
54714356 |
cttcatctttcaccagttgattagctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggacaactagaagaattga |
54714257 |
T |
|
| Q |
422 |
aacagtactggtttttgccatagtgtacaatatctatcagtaactttatttccttcctatcgttattgttttgcatggaataaaataggcttcatctcac |
521 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54714256 |
a---------gtttttgccatagtgtacaatatcactcagtatttttattttcttcctatcgttattgttttgcatggaataaaataggcttcatatcac |
54714166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 54714642 - 54714572
Alignment:
| Q |
18 |
caaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatgga |
88 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54714642 |
caaaccatggccgcaatctctgatcatggaaggatttcagcgttagggttaccgcttttagccacaatgga |
54714572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 454
Target Start/End: Complemental strand, 54728205 - 54728077
Alignment:
| Q |
320 |
agcttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaagt |
419 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| | ||||| ||||| ||||||||||||||| || ||||||||| |||||||||| ||||||||| |
|
|
| T |
54728205 |
agcttcatctttctccagttgattatctcttcccacacccgcagcaa---cactatagccattcacaaa-aatgccacaacaaggacaagcagaacaagt |
54728110 |
T |
|
| Q |
420 |
gaaacagtactggtttttgccatagtgtacaatat |
454 |
Q |
| |
|
||| ||||| | |||||| |||||||| |||||| |
|
|
| T |
54728109 |
gaagcagta--gttttttgtcatagtgtgcaatat |
54728077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 5297739 - 5297310
Alignment:
| Q |
18 |
caaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatggattcggtatgtatatttctacacaaattat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297739 |
caaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatggattcggtatgtatatttctacacaaattat |
5297640 |
T |
|
| Q |
118 |
tgtactgagaacagtagcttttatcgatgccacataacttattatagttaatacaaatgatgaaaataagttttattattatctttttgcgagacttatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297639 |
tgtactgagaacagtagcttttatcgatgccacataacttattatagttaatacaaatgatgaaaataagttttattattatctttttgcgagacttatg |
5297540 |
T |
|
| Q |
218 |
agatttgtcatcatcatcatgaagctgatcagcttcatctttcactagtaattgattaactcttccatcaccctcctcagcagcagaactattcagagta |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
5297539 |
agatttgtcatcatcatcatgaagctgatcagcttcatctttcactagtaattgattaactcttccatcac---cctcagcagcagcactattcagagta |
5297443 |
T |
|
| Q |
318 |
ccagcttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaa |
417 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5297442 |
ccagattcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaactagaacaa |
5297343 |
T |
|
| Q |
418 |
gtgaaacagtactggtttttgccatagtgtaca |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
5297342 |
gtgaaacagtactggtttttgccatagtgtaca |
5297310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 320 - 454
Target Start/End: Complemental strand, 5302868 - 5302739
Alignment:
| Q |
320 |
agcttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaagt |
419 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| | ||||| |||||| ||||||||||||||| || |||||||||| |||||||||| ||||||||| |
|
|
| T |
5302868 |
agcttcatctttctccagttgattatctcttcccacacccacagcag---cactatagccattcacaaataatgccacaacaaggacaagcagaacaagt |
5302772 |
T |
|
| Q |
420 |
gaaacagtactggtttttgccatagtgtacaatat |
454 |
Q |
| |
|
||| ||||| | |||||| |||||||| |||||| |
|
|
| T |
5302771 |
gaagcagta--gttttttgtcatagtgtgcaatat |
5302739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University